Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., murein L,D-transpeptidase from Magnetospirillum magneticum AMB-1

 Score =  196 bits (498), Expect = 2e-54
 Identities = 114/313 (36%), Positives = 172/313 (54%), Gaps = 10/313 (3%)

Query: 203 PGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTM 262
           PG+    R  L++R  + + D    L +   YDA+L + +K+FQ  HGL  D  +G +T+
Sbjct: 204 PGET-DERVPLLRRRLIASGDLADGLAEGKIYDATLAEAVKRFQARHGLDPDATVGGKTL 262

Query: 263 KWLNTSVTERLALLALNAERIRLWPTQQDSM-IVVNVPGFDMKYWDAGREVFESKVVVGK 321
             LN     R+  +  N ER R  P       + VN+    M+  + G      +VVVG 
Sbjct: 263 AHLNVPADARVRQITANLERWRWMPRSFGRHHVAVNIAAQQMEVVEDGSVAMVMRVVVGD 322

Query: 322 TTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIR-GWSDPEV 380
           T  PTP MNT + S+++NP W VP  I  ++ILP +++D  YL +  ++I+      PE 
Sbjct: 323 TKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRKDPNYLTSSKLQIVDYPEGSPES 382

Query: 381 IDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRA 440
                +DW A+  + FPYRLRQ  G  NALG  KFN  +S  IY+HDTP++  F+ + RA
Sbjct: 383 AGDG-VDWNAIGKK-FPYRLRQPPGPDNALGQLKFNLTDSDDIYMHDTPNRRAFSRSYRA 440

Query: 441 FSSGCIRVENAEKFAQTLLAN--QGITLDDFPV--STQAIALKKRIPVHIIYQTVWYEE- 495
            S GC+R+E   +  + +L    QG    D     ST+ + L++ IPV+++Y T W +E 
Sbjct: 441 LSHGCVRLERPVELGELMLGARWQGKLAHDINANRSTRTLMLERTIPVYLMYWTAWADEN 500

Query: 496 GVLHYRDDIYHYD 508
           G LH+RDD+Y +D
Sbjct: 501 GNLHFRDDLYGHD 513