Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., L,D-transpeptidase YcbB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  270 bits (691), Expect = 9e-77
 Identities = 172/525 (32%), Positives = 267/525 (50%), Gaps = 61/525 (11%)

Query: 50  IYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLAT 109
           +Y + + + +W +      F+ QL  +  A F P F+  +  L            DV+ +
Sbjct: 98  LYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMAR--DVVLS 155

Query: 110 DTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPS----------EEAQLALHMAIGNQSL 159
           D ++ YL +    P  G  W +  +      PP           EE QL + +A    SL
Sbjct: 156 DAMMGYLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVA----SL 211

Query: 160 ARLMDEYTPQDPAYQQLL---QAYQSLSSIEF-------NEV-ALYEQMER--------- 199
           A    +Y P   A  +L+   + +  L++          N+V AL E ++R         
Sbjct: 212 APQHPQYAPMHDALLKLVADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPK 271

Query: 200 LKRPGDPLSHREALVQRLALVNLDTTSILND------------VAYYDASLEKPIKQFQK 247
           +  PGD  +   A+V   A+V  D TS+ +D               YD  L + +K+FQ 
Sbjct: 272 IALPGDNTAD-SAVVSPSAVV--DETSVAHDEPTARRSKPAPAARAYDRELVEAVKRFQA 328

Query: 248 MHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWD 307
             GL  DGVIGP T  WLN +  +R  +LALN +R+RL P +  + I+VN+P + + Y+ 
Sbjct: 329 WQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQ 388

Query: 308 AGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANH 367
            G +V  S+V+VG+  R TP+M++ L+++++NP WNVP  +  +DILP V  D  YL  H
Sbjct: 389 NGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERH 448

Query: 368 HMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHD 427
              ++RGW+  E IDP  +DW  + P   P+R +Q  G  N+LG YKFN P+S AIYLHD
Sbjct: 449 GYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHD 508

Query: 428 TPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS-------TQAIALKK 480
           TP+  LF   +RA SSGC+RV  A + A  LL + G   +D  +S       T+ + +++
Sbjct: 509 TPNHTLFQRDARALSSGCVRVNKASELANMLLQDAG--WNDARISGALKQGDTRYVNIRQ 566

Query: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALGNGDASPNLTKI 524
            IPV++ Y T +   +G + YR DIY+YD  A  +    P + ++
Sbjct: 567 NIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQL 611