Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., Uncharacterized protein conserved in bacteria from Enterobacter asburiae PDN3

 Score =  271 bits (693), Expect = 5e-77
 Identities = 174/517 (33%), Positives = 260/517 (50%), Gaps = 55/517 (10%)

Query: 50  IYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSR--QLFALKSYRQQDRWHEYDVL 107
           +Y + + + +W +      F+ QL  +  A F P F++  +L    +   Q R    DV+
Sbjct: 102 LYAARDMKPMWENRDAVRAFQQQLAEVAIAGFQPQFTKWVELLTDPAVTGQAR----DVV 157

Query: 108 ATDTLLQYLSYAEQAPKVGIAWFFEGQLDQP--LAPPSEEAQLALHMAIGNQSLARLMDE 165
            +D ++ YL +    P  G  W +    D+P  LA P+        +A+ N  L R +  
Sbjct: 158 LSDAMMGYLQFVAGIPVNGNRWLYS---DKPYKLATPALSVINQWQLALDNGELPRFIAS 214

Query: 166 YTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLK--RPG----DPLSHREALVQ---- 215
             P  P Y  L Q+  +L      +   + QM      RPG    D  + RE L +    
Sbjct: 215 LAPAHPQYATLHQSLLAL----VGDTRPWPQMRGTATLRPGQWSSDVPALREILTRSGLL 270

Query: 216 ----RLALVNLDTTSI---------------LNDV-AYYDASLEKPIKQFQKMHGLQTDG 255
               ++AL   D  ++               L+D  A YD  L   +KQFQ   GL  DG
Sbjct: 271 DGGPKIALPGDDPQNVAVSPSAPVKEKKAVVLSDKPAAYDRELVAAVKQFQAAQGLGADG 330

Query: 256 VIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFES 315
           VIG  T  WLN S  +R  +LALN +R+RL P    + I+VN+P + + Y+  G E   S
Sbjct: 331 VIGQTTRDWLNVSPAQRAGVLALNIQRLRLLPGTLSTGIMVNIPAYSLVYYQDGSEKLAS 390

Query: 316 KVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGW 375
           +V+VG+  R TP+M++ L+++++NP WNVP  +  +DILP V  D  YL  H   ++RGW
Sbjct: 391 RVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGW 450

Query: 376 SDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFN 435
           +  E IDP ++DW  +     P+R +Q  G  N+LG YKFN P+S AIYLHDTP+ +LF 
Sbjct: 451 NSKEAIDPYMVDWSTITASNLPFRFQQAPGAHNSLGRYKFNMPSSEAIYLHDTPNHNLFQ 510

Query: 436 NASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS-------TQAIALKKRIPVHIIY 488
             +RA SSGC+RV  A + A  LL + G   +D  VS       T+ + ++  IPV++ Y
Sbjct: 511 KDTRALSSGCVRVNKASELANMLLQDAG--WNDTRVSDALKQGDTRYVNIRHNIPVNLYY 568

Query: 489 QTVWY-EEGVLHYRDDIYHYDALALGNGDASPNLTKI 524
            T +  E+G   YR DIY+YD  A       P   ++
Sbjct: 569 LTAFVGEDGRTQYRTDIYNYDLTARSGAQILPKAEQL 605