Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., L,D-transpeptidase from Dickeya dianthicola ME23

 Score =  275 bits (704), Expect = 2e-78
 Identities = 163/480 (33%), Positives = 257/480 (53%), Gaps = 28/480 (5%)

Query: 50  IYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLAT 109
           +Y   + Q +WSD      F+ QL  +  +   P F+  +  L   +        DV+ +
Sbjct: 72  LYSRQHMQPMWSDSHVVKAFQQQLAEVALSGIQPQFTTWVTWLTDPKLNG--FARDVVLS 129

Query: 110 DTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLARLMDEYTPQ 169
           D +L Y+ +     K G +W +   +   LA PS E       A+ + +    +    P+
Sbjct: 130 DAMLGYMQFVAGVEKNGNSWLYSS-VPYKLAAPSTEMMEQWQRAVASGNGPAFIASLAPR 188

Query: 170 DPAYQQLLQAYQSL--SSIEFNEVALYEQMERLKRPGDP---LSHREALVQRLALVNLD- 223
              Y ++  A +++   +  + ++ L + +    RPGD    L   + ++ R  ++N D 
Sbjct: 189 HSQYAKMHDALKNMLTDNRPWPKLILADSL----RPGDESNALPVLKEILLRTGMLNQDG 244

Query: 224 -TTSILNDVAY-------YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLAL 275
               + N+ +        Y+  + + +K+FQ   GLQ DGVIG +T  WLN S   R  L
Sbjct: 245 GAMPLFNEASSGNASPMRYEGDVVEAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQMRATL 304

Query: 276 LALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDS 335
           LALN +R+RL P +  S IVVN+P + + Y+  G E+  SKV+VG+  R TP+MN+ L +
Sbjct: 305 LALNIQRLRLVPDKVSSGIVVNIPNYSLSYYQNGAEILSSKVIVGQPKRKTPLMNSSLSN 364

Query: 336 LIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSD-PEVIDPALIDWEAVEPE 394
           +++NP WNVP  +  +DI+P V +D  YL  H   ++  W++  + IDP++IDW  V   
Sbjct: 365 VVMNPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPMVSAS 424

Query: 395 TFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKF 454
            FPYRLRQ  G +N+LG YKFN PN+ AIYLHDTP+ +LF    RA SSGC+RV  A + 
Sbjct: 425 NFPYRLRQAPGDRNSLGRYKFNIPNTDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASEL 484

Query: 455 AQTLLANQG-----ITLDDFPVSTQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYD 508
           A  LL + G     I+      +T  +A+++R+PV+  Y T W  ++G   +R DIY+YD
Sbjct: 485 AGLLLQDAGWNNARISSTLEQGNTTYVAVRQRVPVNFYYLTAWVSDDGKPQFRTDIYNYD 544