Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., L,D-transpeptidase from Dickeya dadantii 3937

 Score =  274 bits (700), Expect = 7e-78
 Identities = 166/483 (34%), Positives = 259/483 (53%), Gaps = 34/483 (7%)

Query: 50  IYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLAT 109
           +Y   + Q +WSD +    F+ QL  +  +   P F+  +  L   +        DV+ +
Sbjct: 72  LYTRQHMQPMWSDSSVVKAFQQQLAEVALSGIQPQFTTWVTWLTDPKLNG--FARDVVLS 129

Query: 110 DTLLQYLSYAEQAPKVGIAWFFEG---QLDQPLAPPSEEAQLALHMAIGNQSLARLMDEY 166
           D +L Y+ +     K G +W +     +L  P A   E+ Q A+    G   +A L    
Sbjct: 130 DAMLGYMQFVAGVEKNGNSWLYSSVPYKLSMPSAAMIEQWQQAVASGNGLAFMASL---- 185

Query: 167 TPQDPAYQQLLQAYQSL--SSIEFNEVALYEQMERLKRPGDPLSHREALVQ---RLALVN 221
            P+   Y ++  A +++   +  + ++ L + +    RPGD  S    L +   R  ++N
Sbjct: 186 APRHSQYAKMHDALKTMLTDNRPWPKLILADSL----RPGDESSALPVLKEILLRTGMLN 241

Query: 222 LDTTS--ILNDVAY-------YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTER 272
            D  +  + N+ +        Y+  + + +K+FQ   GLQ DGVIG +T  WLN S   R
Sbjct: 242 QDGAAMPLFNEASSGNVSPLRYEGEVVEAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQMR 301

Query: 273 LALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTK 332
             LLALN +R+RL P +  S IVVN+P + + Y+  G E+  S+V+VG+  R TP+MN+ 
Sbjct: 302 ATLLALNIQRLRLVPDKVSSGIVVNIPNYSLSYYQNGAEILSSRVIVGQPKRKTPLMNSS 361

Query: 333 LDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSD-PEVIDPALIDWEAV 391
           L ++++NP WNVP  +  +DI+P V +D  YL  H   ++  W++  + IDP++IDW  V
Sbjct: 362 LSNVVMNPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPMV 421

Query: 392 EPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENA 451
               FPYRLRQ  G  N+LG YKFN PN+ AIYLHDTP+ +LF    RA SSGC+RV  A
Sbjct: 422 SAGNFPYRLRQAPGDSNSLGRYKFNMPNTDAIYLHDTPNHNLFQKDIRALSSGCVRVNKA 481

Query: 452 EKFAQTLLANQG-----ITLDDFPVSTQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIY 505
            + A  LL + G     I+      +T  +A+++R+PV+  Y T W  ++G   +R DIY
Sbjct: 482 SELAALLLQDAGWNNARISSTLEQGNTTYVAVRQRVPVNFYYLTAWVADDGKPQFRTDIY 541

Query: 506 HYD 508
           +YD
Sbjct: 542 NYD 544