Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  141 bits (356), Expect = 6e-38
 Identities = 88/281 (31%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 234 YDASLEKPIKQFQKMHGLQTDGVIGPQTMK-WLNTSVTERLALLALNAERIRLWPTQQDS 292
           Y   L   +K FQ  +GL+ DGVIG  T++  +  S   ++A + +  E++R  P     
Sbjct: 351 YTPDLVDLVKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQVRWLPADLGQ 410

Query: 293 MIV-VNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351
             V +N P F   Y + G E F  KVVVG     T     ++ ++  NP W VP  I+V 
Sbjct: 411 RYVFINQPAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVN 470

Query: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411
           ++LP ++RD  YL     E+  G      +  + ++W      T    +RQ     NALG
Sbjct: 471 EMLPKLRRDPSYLDRLGYEVQVGG---RAVSSSSVNWYG---STNAVSVRQPPSSDNALG 524

Query: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471
             K   PN+ AIY+HDTP+K  FN   RA S GCIR+ +  + A  +L +    +++   
Sbjct: 525 DLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIRLVDPRRMAAAVLGSSVDKVNEQIA 584

Query: 472 S--TQAIALKKRIPVHIIYQTVWYE-EGVLHYRDDIYHYDA 509
           +   +A+ + +++PV++ Y T W + +G + + DD+Y  D+
Sbjct: 585 AGKNRAVQVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDS 625