Pairwise Alignments

Query, 404 a.a., sugar efflux transporter SetB from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., 12-TMS multidrug efflux protein homolog from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 57.4 bits (137), Expect = 8e-13
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 20/249 (8%)

Query: 15  LVTGLCGAFFYPLSSL--FIVEALDASPMQLSLYMVLAVVSSVIVSQWLARQSDRHWQRK 72
           L+ GL  A    + S+  F +  +  SP+ + + +     S    +  +   SDR   RK
Sbjct: 27  LLVGLYAASTAAVMSVLPFYIREMGGSPLIIGIIIATEAFSQFCAAPLIGHLSDRVG-RK 85

Query: 73  TILLVSLICYLITVVSFMFIRSYSLAIMVVVLFASVSGASFGQLFALGREYAD-QHLTDK 131
            IL+V+L    I  +S + + + +  I+ ++L  ++ G S G L A     AD  H+ ++
Sbjct: 86  RILIVTLA---IAAISLLLLAN-AQCILFILLARTLFGISAGNLSAAAAYIADCTHVRNR 141

Query: 132 TTFLSTMRAGIAIAWVFGPPAAFMLKASFGFNAAFAVSALIVFLGIVLIARFLPAGVKTA 191
              +  +   I +  + G   +  L +    +A    +A I+ LG  L+A +   G+K  
Sbjct: 142 RQAIGILTGCIGLGGIVGAGVSGWL-SRISLSAPI-YAAFILVLGSALVAIW---GLKDP 196

Query: 192 SAVGTTPVELGQYSPR---KRALIVLYCVTLVCTFGSNNLYITSMPLYLSRELMVPEHWL 248
           S    T  ++  +S R   K  ++ +  + ++C F +  +Y + +P++LS   +    W 
Sbjct: 197 STTSRTTDKIAAFSARAILKMPVLRVLIIVMLCHFFAYGMYSSQLPVFLSDTFI----WN 252

Query: 249 GLLFGTAAL 257
           GL FG  AL
Sbjct: 253 GLPFGPKAL 261