Pairwise Alignments

Query, 299 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., HTH-type transcriptional activator RhaS from Pseudomonas lactucae CFBP13502

 Score =  110 bits (275), Expect = 4e-29
 Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 13/268 (4%)

Query: 30  FSCP---WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPHMIAGRQL 86
           F CP   WH+H EYEL L         G  F GD IG     +L L GP LPH    +  
Sbjct: 30  FPCPLVRWHFHKEYELHLIVASS----GKVFIGDYIGNFYPESLFLTGPNLPHNWISQIE 85

Query: 87  INKAQTLHSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGVRLS-EQTATRVAELLAN 145
             +       ++ F  E L     +  + ++L  L + A YG+    ++T  +  +L+  
Sbjct: 86  EGEVVPKRDMLVNFTDELLSGASQIFTELKSLAPLLERAQYGIEFRCKKTIAQAMDLMQR 145

Query: 146 VDQQPHSYQSLRVIESLLVMADDAQA-QRLSVAPYVMTALTSNSDTHKKIQLAKQYVEQH 204
           ++      Q +  +    ++ +   A +   +   V T   ++  +  +   A  Y+  H
Sbjct: 146 IEDA----QGMARLGHFFILLEVLGACEDYHLLSGVTTPQQADEHSIDRTNRAVDYIFAH 201

Query: 205 YAQAIKITDLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKACELLASSALPIALIA 264
           YA+ + + ++   L +  +   R+F++  G +F E + + RI K+CELLA     +  + 
Sbjct: 202 YARELPLEEVAEYLGMKPTYFSRVFKQATGRTFIEFVNRLRISKSCELLADGDKAVTDVC 261

Query: 265 ERTGFGNLSNFNRQFKTLKTMTPREFRQ 292
             +GF N+SNFNR+F+ LK MTP  +R+
Sbjct: 262 FESGFNNISNFNRRFQQLKGMTPSHYRR 289