Pairwise Alignments

Query, 299 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., HTH-type transcriptional activator RhaS from Pseudomonas sp. DMC3

 Score =  119 bits (299), Expect = 7e-32
 Identities = 85/279 (30%), Positives = 130/279 (46%), Gaps = 35/279 (12%)

Query: 30  FSCP---WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPH----MIA 82
           F CP   WH+H EYEL L         G  F GD IG     TL L GP LPH     IA
Sbjct: 30  FPCPLVRWHFHKEYELHLIVASS----GKVFIGDYIGNFYPETLFLTGPNLPHNWISQIA 85

Query: 83  GRQLINKAQTLHSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGVRLSEQTATRVAEL 142
             +++ K   L    + F  E  +    V  + ++L  L + A YG+    +   R A  
Sbjct: 86  EDEVVEKRDML----VNFTDELFESGHQVFAELKSLAPLLERAQYGIEFRCKRTIRQAMT 141

Query: 143 L-------ANVDQQPHSYQSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSDTHK--K 193
           L         + +  H +    ++  LL  +DD Q    +  P +       +D H   +
Sbjct: 142 LMQRIADSTGITRLGHFF----ILMELLAASDDFQLLSGATTPQL-------ADEHNIDR 190

Query: 194 IQLAKQYVEQHYAQAIKITDLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKACELL 253
              A  Y+  HYA+ I + ++   L ++ +   R+F++  G +F E + + RI K+CELL
Sbjct: 191 TNRAVDYIFSHYARDISLEEVAVHLGMTPTYFSRVFKQATGRNFIEFVNRLRISKSCELL 250

Query: 254 ASSALPIALIAERTGFGNLSNFNRQFKTLKTMTPREFRQ 292
           A    P+  +   +GF N+SNFNR+F+ LK MTP  +R+
Sbjct: 251 ADGDKPVTEVCFESGFNNISNFNRRFQQLKGMTPSHYRR 289