Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 745 a.a., DNA topoisomerase IV subunit A from Rhodanobacter sp000427505 FW510-R12

 Score =  382 bits (981), Expect = e-110
 Identities = 246/709 (34%), Positives = 378/709 (53%), Gaps = 66/709 (9%)

Query: 11  VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
           + +++    +YLDY+M V++ RALP V DGLKPV RR+++AM+ LG       KKSAR +
Sbjct: 10  IPLKEYAERAYLDYSMYVVLDRALPFVGDGLKPVQRRIIYAMSELGLAATAKPKKSARTI 69

Query: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSK 129
           GDVIGK+HPHGDS+ Y+ +V MAQPFS RY LVDGQGNFGS D   S AAMRYTE ++S 
Sbjct: 70  GDVIGKFHPHGDSSCYEAMVLMAQPFSYRYPLVDGQGNFGSPDDPKSFAAMRYTESKLSP 129

Query: 130 IAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGE 189
           IA  LL +L + TVD+VPN+DGT + P+ LP ++P++L+NG+ GIAVGMAT+IPPHNL E
Sbjct: 130 IAEALLGELGQGTVDWVPNFDGTLEEPSWLPARVPHVLLNGSMGIAVGMATDIPPHNLRE 189

Query: 190 VIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEI 248
           +   C+  +D    ++ EL +++ GPD+PT A +I+ R  ++  Y++G G V  R+    
Sbjct: 190 LAAACIRLLDEPDASVAELCEHVRGPDYPTEAEIITPRTDLLAMYQSGGGSVRARAVYRR 249

Query: 249 ETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR--IVIEC 306
           E     +  I+++ +P+QV+ ++++E+IA  ++ KK+  I  LRDESD +     +++ C
Sbjct: 250 E-----EGNIVITALPHQVSPSKILEQIAAQMRAKKLPMIEDLRDESDHENPTRLVIVLC 304

Query: 307 KRDAVGEVVLNNLYANTQLQTTFGIN--MVALDNGQPKLFNLKEMLKCFVDHRREVVTRR 364
                 +  + +L+A T L+ +F IN  M+ LD G+P++ +LK++L  ++  R   VTRR
Sbjct: 305 SNRVDADETMQHLFATTDLEKSFRINLNMIGLD-GRPQVKDLKKILTEWLAFRTNTVTRR 363

Query: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424
               L K   R H+LEGL +A  N+DE+I ++R                           
Sbjct: 364 LNHRLAKVERRLHLLEGLRIAYLNLDEVIRIVR--------------------------- 396

Query: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484
               D  RP  +         ++ L+E+Q   IL+ RL +L  LE  KI  E  QL EE 
Sbjct: 397 --SEDEPRPVLM--------ARFRLSEEQTDYILETRLRQLARLEEMKINAERDQLEEER 446

Query: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTL 542
           A +  +L S  +L  +I++EL A  A F D RR+ +      H +D   L+A E V V L
Sbjct: 447 ARINVLLKSPAKLKGLIKDELRADAAKFGDERRSPLVEREVAHALDESALVASEPVTVVL 506

Query: 543 SHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMK 602
           S +G+ +     D +A         A   +E D +   + A T   +    + G+ Y   
Sbjct: 507 SQKGWARAAKGHDVDA--------DALNYREGDGLLAAVKARTTQQVAFIDSTGRAYSTL 558

Query: 603 VYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQF 662
            + LP  S    G+P+             A++       D  + +AT  G    T  +  
Sbjct: 559 AHTLP--SARGNGEPLTGRFSPAAGASFDALI---AGDNDTRLVLATDFGYGFVTRFEAL 613

Query: 663 ANVRANGLIALNLRDEDSLIG--VDITDGESEIMLFSKFGKVVRFKESE 709
                 G   ++L D   ++            I++ S  G ++ F  +E
Sbjct: 614 TGRNKAGKQIISLSDGAKVLAPQASADPARDRIVVVSSEGHLLMFSVAE 662



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 587 DNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNL--LPLEENERITAILPVTEFSEDKF 644
           D I++ S+ G      V +LP   +  +G  ++ +    L E ER+  +  V+E   +  
Sbjct: 644 DRIVVVSSEGHLLMFSVAELPELDK-GKGNKLIEIPKKQLAEGERVAGVAVVSEGKGEVT 702

Query: 645 IFMATGDGTVKKTSLDQFANVRAN--GLIALNLR 676
           ++      T+K   L ++   RA+  GL+   LR
Sbjct: 703 MYAGARKLTLKWADLVEYGGARASRGGLLPRGLR 736