Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., DNA gyrase subunit A from Rhodanobacter sp000427505 FW510-R12

 Score = 1108 bits (2867), Expect = 0.0
 Identities = 568/891 (63%), Positives = 705/891 (79%), Gaps = 31/891 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M++LAKE+  VNIEDE+R SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMN LGN +N
Sbjct: 1   MAELAKEVIRVNIEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNVYN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGD +VYD IVR+AQPFSLRYMLVDGQGNFGS+DGDSAAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDQSVYDAIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRMS+++HELLAD+DKETVD+ PNYD +EQ P VLPT++PNLL+NG++GIAVGMAT
Sbjct: 121 RYTEVRMSRLSHELLADIDKETVDFGPNYDESEQEPLVLPTRVPNLLVNGSAGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI   +A ID  A++ID+LM YIPGPDFPT  +I+G  GII+AY+TGRG++
Sbjct: 181 NIPPHNLNEVIAATIALIDEPALSIDDLMHYIPGPDFPTHGIINGSSGIIEAYRTGRGRI 240

Query: 241 YMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
            +R+KAEIET+ NG+ETIIV E+PYQVNKARLIEKIAELVKEKK+EGIS LRDESDKDGM
Sbjct: 241 LVRAKAEIETEPNGRETIIVHELPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGM 300

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           R+VIE ++DA+G+VVLNNL+  TQLQ TFGINMVAL +GQPKL N+K++L+ F+ HRREV
Sbjct: 301 RVVIEIRKDAMGDVVLNNLFQQTQLQVTFGINMVALLDGQPKLLNIKDILEAFIRHRREV 360

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           VTRRTIF+LRKAR RAHILEGL +ALANIDE+IELI+ +++PAEA+E ++ R W+ G V 
Sbjct: 361 VTRRTIFDLRKARARAHILEGLTVALANIDEMIELIKTSSSPAEARERMVVRRWEAGLVR 420

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
            +L  +G  A+RPE ++P+ G++   Y L+E QA  IL +RLH+LTGLE EK+ DEY+Q+
Sbjct: 421 TLLSASGAGASRPEDMDPRDGLKADGYQLSEAQALEILAMRLHRLTGLEQEKLSDEYRQI 480

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
           LE I  L+ IL + +RL++VIREELEAI+A F DARRTEI  +  D+++ +LI  EDVVV
Sbjct: 481 LETIRGLIEILENPDRLLQVIREELEAIKAEFGDARRTEIQHSQEDLNVLDLITPEDVVV 540

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
           TLSH GYVK Q  S Y AQRRGG+G+SA+ +K+ED +E+L V NTHD +L F++ G+ Y 
Sbjct: 541 TLSHTGYVKRQPASAYRAQRRGGRGRSASALKDEDVVEQLWVVNTHDTLLTFTSTGRVYW 600

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +KVYQ+P A   ARGKPI+NLLPL E E++ A+LPV E+ +D+++F AT  GTVKKT L 
Sbjct: 601 LKVYQMPEAGSGARGKPIINLLPLGEGEKVQAVLPVREYGDDRYVFFATKHGTVKKTPLT 660

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
           +FA     G  A+ L + D+L+ V++TDG S+I+LF+  GKV RF         DEN   
Sbjct: 661 EFAYQLQKGKQAIKLDEGDALVNVELTDGNSDILLFASNGKVNRF---------DEN--- 708

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRT 780
                         VR MGRTA GVRGM+LADG +VVSLIV   +GD+LT T  GYGKRT
Sbjct: 709 -------------TVRSMGRTATGVRGMRLADGAEVVSLIV-AAQGDILTATARGYGKRT 754

Query: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG 840
            L E+P KGRGTQGV+ I+ SERNG++V AVQV+E  E M+I++ GTLVRTRVAEVSQ+G
Sbjct: 755 RLDEFPKKGRGTQGVIGIQCSERNGALVAAVQVSEAHELMLISDQGTLVRTRVAEVSQLG 814

Query: 841 RNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALVENDAPVAQDDDG 891
           RNTQGVTLIR    E++V + R++  E++    GE+A     AP   DDDG
Sbjct: 815 RNTQGVTLIRLPADETLVSVMRLEADEDN----GEDA-ASAAAPEPADDDG 860