Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 745 a.a., DNA topoisomerase 4 subunit A from Xanthobacter sp. DMC5

 Score =  431 bits (1109), Expect = e-125
 Identities = 289/797 (36%), Positives = 424/797 (53%), Gaps = 87/797 (10%)

Query: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67
           I  V +++ L   YL YA+S I+ RALPD RDGLKPVHRR+L AM  L  D  + +KKSA
Sbjct: 13  IEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLRLDPGQGFKKSA 72

Query: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127
           RVVGDVIGK+HPHGD +VYD +VR+AQ F+ RY LVDGQGNFG++DGD+AAAMRYTE R+
Sbjct: 73  RVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEARL 132

Query: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187
           ++ A  LL  +D++ VD+ P YDG+E+ PAVLP   PNLL NG+ GIAVGMAT+IPPHN 
Sbjct: 133 TETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQGIAVGMATSIPPHNA 192

Query: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKA 246
            E++D  L  ID+      +L+ ++PGPDFPT   L+    G+ +AY TGRG   +R++ 
Sbjct: 193 AELLDAALHLIDHPDALAFDLLKFVPGPDFPTGGVLVEDPVGVAEAYATGRGSFRVRARW 252

Query: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306
           E E    G   ++V+EIPY V K+RL+EKIAEL+ +KK+  ++ +RDES +D +R+V+E 
Sbjct: 253 EKEDTGRGGYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADVRDESAED-IRLVLEP 311

Query: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364
           + R    EV++ +L+  T+L+    +NM  L  GQ PK+ +L E L+ ++DHRR+V+ RR
Sbjct: 312 RTRTVDAEVLMESLFKLTELEARIPLNMNVLVKGQIPKVLSLAEALREWLDHRRDVLLRR 371

Query: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424
           + + L +   R  +L G  +A  N+DE+I +IR                           
Sbjct: 372 SRYRLDQIAHRLEVLGGYLIAYLNLDEVIRIIR--------------------------- 404

Query: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484
                    E  EP+  +    + LT+ QA+AIL++RL  L  LE  +I  E+  L +E 
Sbjct: 405 ---------EEDEPKVSLMQ-TFELTDVQAEAILNMRLRSLRRLEEMEIRKEHDALSKEQ 454

Query: 485 AALMHILASTERLMEVIREELEAIRAGFS-----DARRTEITAAT---HDIDMEELIARE 536
             L  ++AS     + I +E+   R  +        RRT   AA     D   E L+ RE
Sbjct: 455 DGLNRLVASETAQWKAISKEIRETRKTYGPETALGRRRTTFAAAPTVHEDAFTEALVERE 514

Query: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596
            V V +S +G+++        A +      S  + K +D       A T   +++F++ G
Sbjct: 515 PVTVVVSAKGWIR--------ALKGHVADVSNLQFKGDDSHGHAFFAETTSKVMVFASNG 566

Query: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKK 656
           + Y +   +LP       G+P+  ++ LE+   I ++    +      +    G G V  
Sbjct: 567 RFYTLDASKLP--GGRGHGEPVRLMIDLEQEAEIVSVF-AYQAGRKLLVASKQGRGFVVP 623

Query: 657 TSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDE 716
              D  AN R    +              +TD     +        VRF + +  AV+ E
Sbjct: 624 ED-DCLANTRKGKQVL-------------VTDPPDAAL-------AVRFVDGDWVAVIGE 662

Query: 717 NGQP-VLDENGQPEI-KFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTE- 773
           N +  V   N  PE+ + +GVR       G+  +K+        L    T G   TVT+ 
Sbjct: 663 NRKMLVFPLNQIPEMSRGRGVRLQRYKDGGLSDLKVF--PMATGLTWEDTSGRTWTVTDL 720

Query: 774 -NGYGKRTSLSEYPTKG 789
               G+R S    P KG
Sbjct: 721 IEWQGERASAGRLPPKG 737