Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., DNA topoisomerase IV subunit A from Pseudomonas simiae WCS417

 Score =  397 bits (1020), Expect = e-114
 Identities = 274/783 (34%), Positives = 423/783 (54%), Gaps = 96/783 (12%)

Query: 12  NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVG 71
           ++ D   ++YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG D +  +KKSAR VG
Sbjct: 16  SLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKSARTVG 75

Query: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKI 130
           DV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ 
Sbjct: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135

Query: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190
           +  LL++L + T D+ PN+DGT   P VLP ++PN+L+NG +GIAVGMAT++PPHNL EV
Sbjct: 136 SEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195

Query: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEIE 249
              C+  +D    T+++L ++I GPD+PT A +I+ R  ++  Y+TG+G V MR+   IE
Sbjct: 196 ATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMRAVYHIE 255

Query: 250 TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEK--KVEGISALRDESDKDG-MRIVIEC 306
                   IIV+ +P+QV+ A+++E+IA L++ K  K+  ++ LRDESD +   RIVI  
Sbjct: 256 DGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPCRIVIIP 310

Query: 307 KRDAVG-EVVLNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTR 363
               V  EV++ +L+A+T L++++   +N++ LD G+P+L NL+ +L  +++ R + V R
Sbjct: 311 TNSRVDHEVLMQHLFASTDLESSYRVNVNIIGLD-GKPQLKNLRNLLVEWLEFRVQTVRR 369

Query: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423
           R  F L K   R H+L+GL +A  N+DE+I +IR A  P   K  LIAR           
Sbjct: 370 RLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHP---KAELIAR----------- 415

Query: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483
                                  + L+E QA  ILD RL +L  LE  K+ DE   LL+E
Sbjct: 416 -----------------------FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKE 452

Query: 484 IAALMHILASTERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVT 541
            A L  +L S  +L +++R EL      + D RR+ I   A    +   EL+  E + V 
Sbjct: 453 QAKLQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTETELLPNEKITVV 512

Query: 542 LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRM 601
           LS +G+V+     D +A        +    K  D  +      ++   +   + G++Y +
Sbjct: 513 LSEKGWVRSAKGHDIDA--------TGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSV 564

Query: 602 KVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD---GTVKKTS 658
             + LP  S   +G+P+   L          +L      +D  +++   D   G V K  
Sbjct: 565 PAHTLP--SARGQGEPLTGRLTPPPGANFECVL----LPDDDALYVIASDAGYGFVVKGE 618

Query: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESE-IMLFSKFGKVVRFKESEETAVVDEN 717
             Q  N     L++L   +   ++   + D E   +   +  G+++ FK S+        
Sbjct: 619 DLQAKNKAGKALLSLP-NNAKVILPRPVDDREGNWLASVTTEGRLLVFKISD-------- 669

Query: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYG 777
               L + G+ +         G    G+ G ++A  ++ V+ I    EG  L +     G
Sbjct: 670 ----LPQLGKGK---------GNKIIGIPGERVASREEYVTDIAVIPEGATLVLQA---G 713

Query: 778 KRT 780
           KRT
Sbjct: 714 KRT 716



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 22/131 (16%)

Query: 759 LIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVV--GAVQVAEG 816
           +++P  +   +  ++ GYG      +   K +  + ++S+     N  V+    V   EG
Sbjct: 594 VLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP---NNAKVILPRPVDDREG 650

Query: 817 DEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGL--QRIDEIEE-----S 869
           +    +T  G L+  +++++ Q+G+           +G  ++G+  +R+   EE     +
Sbjct: 651 NWLASVTTEGRLLVFKISDLPQLGK----------GKGNKIIGIPGERVASREEYVTDIA 700

Query: 870 ELPEGEEALVE 880
            +PEG   +++
Sbjct: 701 VIPEGATLVLQ 711