Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 884 a.a., DNA gyrase subunit A from Pseudomonas simiae WCS417

 Score = 1162 bits (3005), Expect = 0.0
 Identities = 586/895 (65%), Positives = 723/895 (80%), Gaps = 27/895 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M +LAKEI PVNIEDEL+ SYLDYAMSVIVGRALPD RDGLKPVHRRVLFAM+ LGNDWN
Sbjct: 1   MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRY+LVDGQGNFGS+DGD+AAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRM+K+AHELLADL KETVD+VPNYDGTE IPAV+PTKIPNLL+NG+SGIAVGMAT
Sbjct: 121 RYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNLGEVIDGCLA IDN  +T+DELM YIPGPDFPTAA+I+GR GII+AY+TGRG++
Sbjct: 181 NIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRI 240

Query: 241 YMRSKAEIET-DK-NGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKD 298
           YMR+++ IE  DK  G++ I+++E+PYQ+NKARLIEKIAELVKEKK+EGI+ LRDESDKD
Sbjct: 241 YMRARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD 300

Query: 299 GMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRR 358
           GMR+VIE +R  V EV+LNNLYA TQLQ+ FGIN+VAL +G+P++ NLK++L+ FV HRR
Sbjct: 301 GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRR 360

Query: 359 EVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGN 418
           EVVTRRT+FELRKARER HILEG A+AL+NID +I LI+ + TP+EAKE LI+  W+   
Sbjct: 361 EVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSA 420

Query: 419 VAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYK 478
           V AM+ERAG D+ RPE L+PQYG+R+GKYFL+ +QAQAIL+LRLH+LTGLEHEK+L EY+
Sbjct: 421 VVAMVERAGADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQ 480

Query: 479 QLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDV 538
           ++L +I  L+ IL+S  RLMEVIREELE IRA + D RRTEI  A  D+ + ++I  E+ 
Sbjct: 481 EILNQIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEER 540

Query: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
           VVT+SH GY K Q L+ Y+AQRRGGKGKSAT +K+EDYI  LLVAN+H  +LLFS++GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
           Y +K Y++P ASR ARG+P+VNLLPL+ +E IT +LPV E++E  FIFMAT  GTVKKT 
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660

Query: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718
           L+ F+  R+ GLIAL L + D LI   ITDGE E+MLFS  GKV RFKES+         
Sbjct: 661 LESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESD--------- 711

Query: 719 QPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGK 778
                           VR MGRTA GVRGM+L +G +++S+++P+    +LT +E GYGK
Sbjct: 712 ----------------VRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASERGYGK 755

Query: 779 RTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQ 838
           RT++SE+P   RG QGV+++  ++RNG +VGAVQV +G+E M+I++ GTLVRTRVAEVS 
Sbjct: 756 RTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSS 815

Query: 839 VGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALVENDAPVAQDDDGEQ 893
           +GRNTQGVTLI+ ++ E +VGL+R+ E  E E  E E    E +   A DD+ ++
Sbjct: 816 LGRNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEELEGEEFEGEVIAAGDDNVDE 870