Pairwise Alignments
Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056
Subject, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45
Score = 991 bits (2562), Expect = 0.0
Identities = 513/883 (58%), Positives = 647/883 (73%), Gaps = 43/883 (4%)
Query: 1 MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
M+ AKE P+++E+E+RSSYLDYAMSVIVGRALPD RDGLKPVHRRVLFAM+ L NDWN
Sbjct: 1 MTSFAKETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWN 60
Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
+ YKKSAR+VGDVIGKYHPHGD +VYDTIVR+AQ FS+R+MLVDGQGNFGS+DGD+AAAM
Sbjct: 61 RPYKKSARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAM 120
Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
RYTE+R++KIAHE+LAD+DKETVD+ NYDG+E+ P VLP+++PNLL+NG+ GIAVGMAT
Sbjct: 121 RYTEIRLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMAT 180
Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
NIPPHNL EV+D CL + N +IDELM+ +P PDFPTA +I G G+ D Y+TGRGKV
Sbjct: 181 NIPPHNLNEVVDACLYLLRNPEASIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKV 240
Query: 241 YMRSKAEIE-TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
MR+K E D+ ++ IIV E+PYQVNK L E++AELV EKK+EGIS ++DESDK G
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300
Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
MR+VIE KR V EVVLNNLY TQLQ TFGINMVAL +GQPKL NLK++++ F+ HRRE
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIQVFLQHRRE 360
Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
VVTRRT+F LRKARER H+LEGLA+ALANIDE I +IR + TP AK L+ R WD V
Sbjct: 361 VVTRRTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLV 420
Query: 420 AAMLERAGTDAA-------RPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHE 471
ML R+ D RPE LE +YG+ DG Y L++ QAQ IL +RL +LTGLE +
Sbjct: 421 REMLTRSRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQD 480
Query: 472 KILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSD----ARRTEITAATHDI 527
KI+ EYK ++ EI L+ ILA ER+ +I EEL I+ F ARR+ + + +D+
Sbjct: 481 KIVAEYKDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVEHSAYDL 540
Query: 528 DMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHD 587
E+LI D+VVTLSH GY+K Q L +Y AQ+RGG+GK AT K++D+I++L +ANTHD
Sbjct: 541 STEDLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKDDDWIDQLFIANTHD 600
Query: 588 NILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVT----EFSEDK 643
IL FS RG+ Y +KV+++P SR +RG+PIVN+ PL+E E+I L +T F D+
Sbjct: 601 YILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ 660
Query: 644 FIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVV 703
++FMAT GTVKKT+LD+F N R G+IA+NL + D LIG +TDG+ ++MLFS GK V
Sbjct: 661 YVFMATSMGTVKKTALDEFNNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAV 720
Query: 704 RFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPK 763
RF E + VRP+GR A GVRGM L G V++++V +
Sbjct: 721 RFDEED-------------------------VRPLGRNARGVRGMSLEAGQGVIAMLVAE 755
Query: 764 TE-GDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMI 822
E VLT TENGYGKRTS++EY GRGT+G+++I+ SERNG VV A V DE M+I
Sbjct: 756 DEQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHSDDEIMLI 815
Query: 823 TNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDE 865
T+ G LVRTRVAE+ ++GR TQGVTLI EG + GLQRI E
Sbjct: 816 TDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKLSGLQRIVE 858
Score = 42.7 bits (99), Expect = 1e-07
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 768 VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGT 827
V T G K+T+L E+ +G G++++ + E + ++GA + M+ ++ G
Sbjct: 662 VFMATSMGTVKKTALDEFNNPRKG--GIIAVNLDEGD-YLIGAALTDGKHDVMLFSDGGK 718
Query: 828 LVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGE 875
VR +V +GRN +GV + G+ V+ + ++ ++S L E
Sbjct: 719 AVRFDEEDVRPLGRNARGVRGMSLEAGQGVIAMLVAEDEQQSVLTATE 766