Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 801 a.a., DNA topoisomerase IV subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  397 bits (1021), Expect = e-114
 Identities = 258/661 (39%), Positives = 370/661 (55%), Gaps = 78/661 (11%)

Query: 9   TPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYK---- 64
           T + + D  +++YL+YA+SV+ GRALPDV DG KPV RR+L++M+ +G  +         
Sbjct: 17  TTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGTVGA 76

Query: 65  ---KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121
              KSARVVGDV+G++HPH D A YD +VRMAQ FS RY LVDGQGNFGS DGD AAAMR
Sbjct: 77  KPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMR 136

Query: 122 YTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATN 181
           YTE R+++I   LL ++D+ TVD++PNYDG+ + P +LP ++P  L+NGASGIAVG+AT 
Sbjct: 137 YTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATE 196

Query: 182 IPPHNLGEVIDGCLAYI-DNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGK 239
           IP HNL E+ D C+A I  N  ++ +EL   +PGPD+P  A +IS    I DAY+TGRG 
Sbjct: 197 IPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISNASDIADAYRTGRGS 256

Query: 240 VYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISAL-------- 291
           + +R++ +IE    G+  ++V+E+P  V+  +++E+I E+   K   G  AL        
Sbjct: 257 LKVRARWKIEELARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQLK 316

Query: 292 ----------RDESDKD-GMRIVIECKRDAVG-EVVLNNLYANTQLQTTFGIN--MVALD 337
                     RDES KD  +R+V E K   +  +  +  L A T L+T+  IN  MV +D
Sbjct: 317 AAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGID 376

Query: 338 NGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIR 397
            G+P   +L++ML  ++  R   V +R+   L K  +R HILEG  L L NIDE+I +IR
Sbjct: 377 -GKPTQKSLRQMLNEWIAFREVTVEKRSRHRLNKVLDRIHILEGRQLVLLNIDEVIAIIR 435

Query: 398 RAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAI 457
            A  P   K  LIAR                                  + L+++QA+ I
Sbjct: 436 AAEDP---KAALIAR----------------------------------FNLSDRQAEDI 458

Query: 458 LDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARR 517
           L++RL +L  LE  KI  E   L +E   L  IL S   L  ++ +E+EA    F D RR
Sbjct: 459 LEIRLRQLARLEAIKIEQELSGLRDEQKKLEDILGSPAALRRLLVKEIEADAKTFEDPRR 518

Query: 518 TEITAATHDIDMEELIAREDVVVTLSHEGYVKYQ--LLSDYEAQRRGGKGKSATK--MKE 573
           T I A    +  E  +  E V V +S +G+V+ Q    S+  A   GG G SA +   K 
Sbjct: 519 TLIQAEKRAV-AEVKVVDEPVTVIVSQKGWVRAQKGWASEKAAAANGGNGASAPEYSFKS 577

Query: 574 EDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLAS---RTARGKPIVNLLPLEENERI 630
            D +       + D +L+F +  K   ++VY +P+AS       G+P+  L+ L+    +
Sbjct: 578 GDSLYGAFECRSVDTLLVFGS-AKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHV 636

Query: 631 T 631
           T
Sbjct: 637 T 637