Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 797 a.a., DNA topoisomerase IV subunit A from Variovorax sp. OAS795

 Score =  405 bits (1042), Expect = e-117
 Identities = 260/659 (39%), Positives = 376/659 (57%), Gaps = 78/659 (11%)

Query: 9   TPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYK---- 64
           T + + D  +++YL+YA+SV+ GRALPDV DG KPV RR+L++M+ +G  +  A      
Sbjct: 17  TTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTVGA 76

Query: 65  ---KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121
              KSARVVGDV+G++HPH D A YD +VRMAQ FS RY LVDGQGNFGS DGD AAAMR
Sbjct: 77  KPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMR 136

Query: 122 YTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATN 181
           YTE R+++I   LL ++D+ TVD++PNYDG+ + P +LP ++P  L+NGASGIAVG+AT 
Sbjct: 137 YTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATE 196

Query: 182 IPPHNLGEVIDGCLAYID-NEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGK 239
           IP HNL E+ D C+A I  N  ++ +EL+  +PGPD+P  A +ISG   I +AY+TGRG 
Sbjct: 197 IPSHNLREIADACVALIKANGKLSDEELLQIVPGPDYPGGAQIISGPADIAEAYRTGRGS 256

Query: 240 VYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISAL-------- 291
           + +R++ +IE    G+  ++V+E+P  V+  +++E+I E+   K   G  AL        
Sbjct: 257 LKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAEQTQLK 316

Query: 292 ----------RDESDKD-GMRIVIECKRDAVG-EVVLNNLYANTQLQTTFGIN--MVALD 337
                     RDES KD  +R+V E K   +  E  +  L A T L+T+  IN  MV +D
Sbjct: 317 AAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQEEFITTLLAQTSLETSSPINLTMVGID 376

Query: 338 NGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIR 397
            G+P   +L++ML  ++  R   V +R+   L K  +R HILEG  L L NIDE+I +IR
Sbjct: 377 -GKPTQKSLRQMLNEWIAFRAVTVEKRSQHRLGKVMDRMHILEGRQLVLLNIDEVIAIIR 435

Query: 398 RAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAI 457
            A  P   K  LIAR                                  + L+E+QA+ I
Sbjct: 436 AAEDP---KAALIAR----------------------------------FDLSERQAEDI 458

Query: 458 LDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARR 517
           L++RL +L  LE  KI  E K L EE   L  ILAS   L  ++ +E+E+    F D RR
Sbjct: 459 LEIRLRQLARLEAIKIEQELKGLREEQKKLEDILASPAALRRLLVKEIESDAKTFEDPRR 518

Query: 518 TEITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATK--MKEED 575
           T I A    +  E  +  E V V +S +G+V+ Q    + +++ GG G +A +   K  D
Sbjct: 519 TLIQAEKRAV-AEVKVVDEPVTVIVSQKGWVRAQ--KGWASEKNGGNGSAAPEYSFKSGD 575

Query: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLAS---RTARGKPIVNLLPLEENERIT 631
            +       + D +L+F +  K   ++VY +P+AS       G+P+  L+ L+    +T
Sbjct: 576 TLYGAFECRSVDTLLVFGS-AKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHVT 633