Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  392 bits (1006), Expect = e-113
 Identities = 255/696 (36%), Positives = 391/696 (56%), Gaps = 66/696 (9%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG   +  YKKSAR VGDV+GKYHP
Sbjct: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE ++SK A  LL++L
Sbjct: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TVD+ PN+DGT Q P +LP ++P++L+NG +GIAVGMAT+IPPHN+ EV D  +  I
Sbjct: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           DN    + +LM Y+ GPDFPT A +I+    +   Y++GRG + MR+       K G + 
Sbjct: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA----VWCKEGSD- 256

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EVV 315
           I+++ +P+QV+ A+L+E+IA  ++ KK+  +  LRDESD +   RIVI  + + V  +++
Sbjct: 257 IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLL 316

Query: 316 LNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKAR 373
           +N+L+A+T L+ +F   +NM+ LDN +P++  L ++L  ++  RRE V  R  + L K  
Sbjct: 317 MNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLDKVL 375

Query: 374 ERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARP 433
            R HIL+GL +A  N+DE+IE+IR    P   K  L+AR                     
Sbjct: 376 ARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR--------------------- 411

Query: 434 EWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAS 493
                        + LT+ QA AILD +L  L  LE  KI  E  +L +E   L  +L S
Sbjct: 412 -------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGS 458

Query: 494 TERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLSHEGYVKYQ 551
             RL  ++++E++A    F D RR+ +        +   +L+  E + V LS +G++++ 
Sbjct: 459 ERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHA 518

Query: 552 LLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR 611
              D + Q       S      ++Y+      +    + L S  G++Y ++ + LP  S 
Sbjct: 519 KGHDVDCQ-------SLNYKAGDNYLTHACGKSNQQAVFLGSD-GRSYSLESHTLP--SA 568

Query: 612 TARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLI 671
             +G+PI   L + E    T I  V    ED+   + +  G       D   +   +G  
Sbjct: 569 RGQGEPITGRLNVAEG---TTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKA 625

Query: 672 ALNLRDEDSLIGVDITD--GESEIMLFSKFGKVVRF 705
            +NL +   ++   +       EI+  +  G+++ F
Sbjct: 626 LINLPENSEVMTPQVIADLDNDEILAITNQGRMLLF 661



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 25/139 (17%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 706 KESEETAVVDENGQPV-LDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKT 764
           K +++   +  +G+   L+ +  P  + +G    GR       + +A+G  +  +++ + 
Sbjct: 543 KSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGR-------LNVAEGTTIRQVVMGEE 595

Query: 765 EGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAE--GDEFMMI 822
           +   L  ++ GYG      +  +K R  + ++++     N  V+    +A+   DE + I
Sbjct: 596 DQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLP---ENSEVMTPQVIADLDNDEILAI 652

Query: 823 TNAGTLVRTRVAEVSQVGR 841
           TN G ++   + ++ Q+ +
Sbjct: 653 TNQGRMLLFPIKDLPQLSK 671