Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 775 a.a., DNA topoisomerase IV subunit A (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  397 bits (1019), Expect = e-114
 Identities = 252/715 (35%), Positives = 386/715 (53%), Gaps = 89/715 (12%)

Query: 17  LRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA-------------- 62
           L   YL YA+S I  R+LPD+RDGLKPVHRR+L+AM +L  +   A              
Sbjct: 20  LSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGANPDVLVANPARNTT 79

Query: 63  -YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121
            YKK ARVVGDVIGKYHPHGD++VYD +VR+AQ FSLR  LVDGQGNFG+IDGD+AAAMR
Sbjct: 80  SYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAMR 139

Query: 122 YTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATN 181
           YTE R+++ A +L+A LD+ TVD+ P Y+G ++ P V P   PNLL NGASGIAVGMAT+
Sbjct: 140 YTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVFPGLFPNLLANGASGIAVGMATS 199

Query: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGII-DAYKTGRGKV 240
           IPPHN+GE++D     ID+       LM+ + GPDFPT  ++   + II +AY+TGRG  
Sbjct: 200 IPPHNVGELLDAATLLIDSPEADDAALMEIVKGPDFPTGGVLVDNQAIISEAYRTGRGS- 258

Query: 241 YMRSKAEIETDKN---------------GKETIIVSEIPYQVNKARLIEKIAELVKEKKV 285
             R++A   T +N               G   +++SEIPYQV K++LIE+IA L+ +KK+
Sbjct: 259 -FRTRARFSTGRNEDGSWEAEGIEKLAGGTWQLVISEIPYQVQKSKLIEQIAALINDKKL 317

Query: 286 EGISALRDESDKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLF 344
             +  +RDESD+    +++   R+   +++ ++L+  T L+  F +N+  LD    P++ 
Sbjct: 318 PILEDVRDESDEAIRIVIVPKSRNVPVDILKDSLFRLTDLENRFPLNLNVLDASHTPRVL 377

Query: 345 NLKEMLKCFVDHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAE 404
            L+ +L  ++ H+ EV+ RR    L K   R  +L+G  +A  N+D +IE+IR    P +
Sbjct: 378 GLRAVLVEWLKHQIEVLVRRAQHRLEKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKD 437

Query: 405 AKEGLIARGWDLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHK 464
                            M++                     ++ LT++QA+AIL++RL  
Sbjct: 438 V----------------MMD---------------------EFSLTDRQAEAILNMRLRS 460

Query: 465 LTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFS-----DARRTE 519
           L  LE  ++  E+ +L++E A L  ++ S  R    ++ ++  +R  +        RRT 
Sbjct: 461 LRKLEEMELRREHAELVKEQAELEKLVESPARQRTRLKRDIADLRKRYGPDTVIGRRRTL 520

Query: 520 ITAA--THDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYI 577
           +  A    +I +E +I RE V V LS  G+++        +  R        K KE D  
Sbjct: 521 VEEAGPAREIPLEAMIEREPVTVILSERGWIRAM------SGHRDLAAADTLKFKEGDGP 574

Query: 578 ERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVT 637
           +    A T D +L+ ++ G+ Y +   +LP       G P+  ++ +++   I A++P  
Sbjct: 575 QFAFHAYTTDKLLMATSSGRIYTLGADKLP--GGRGFGDPVRMMVDMDDQGGIVALMPAR 632

Query: 638 EFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESE 692
              +   + +A+ DG      +         G   +N+R    L  V   D E++
Sbjct: 633 TGGQ---LLLASSDGRGFLADVADILAETRKGKQVVNVRTGAKLAVVHAVDPEAD 684