Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 911 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  796 bits (2056), Expect = 0.0
 Identities = 425/930 (45%), Positives = 594/930 (63%), Gaps = 77/930 (8%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           +I+P++I DE++SSYLDYAMSVIV RALPDVRDGLKPVHRR+LF+    G  +N+ Y+KS
Sbjct: 12  DISPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSAQESGFVYNRPYRKS 71

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           AR+VG+V+GKYHPHGDS++YD + RM Q +S+R  L+DGQGNFGS+D D  AAMRYTE R
Sbjct: 72  ARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           ++K+A  LL DLDK+TVD+ PNYD +E  P VLP + PNLL+NGA GIAVGMATNIPPHN
Sbjct: 132 LAKVATALLEDLDKDTVDFTPNYDASESEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKA 246
           LGEV+  CLAYI+N AI+ DEL+  +PGPDFPTA LI G+ G  +AY TGRG + MR++ 
Sbjct: 192 LGEVLRACLAYIENPAISTDELIQIVPGPDFPTAPLILGQSGARNAYHTGRGSILMRARH 251

Query: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306
           E+E  +  + +I+++ IPYQV K+ L+EKIAE  K+K++EGIS +RDES ++G+RIV++ 
Sbjct: 252 EVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESSREGVRIVMDL 311

Query: 307 KRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTI 366
           KRDA  +VVLN L+ NT  Q++F  NM+A+  G+P+L  L+++++ FV  R EV+TRRT 
Sbjct: 312 KRDATPDVVLNQLWRNTPAQSSFPANMLAIRGGRPELLGLRDIIEAFVKFREEVITRRTK 371

Query: 367 FELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERA 426
           FEL KAR+RAHIL GL +A+ N+DE++++IR +A+PA A+E L+AR W +G +A  L   
Sbjct: 372 FELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAAARESLLAREWPIGEIAPYL--- 428

Query: 427 GTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAA 486
               A  E +E +  +    Y L++ Q +AILDLRLH+LT L  ++I  E  +L E IA 
Sbjct: 429 ----ALVEAIETE--VSGESYKLSDVQVRAILDLRLHRLTALGRDEIGKELAELAEAIAE 482

Query: 487 LMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEG 546
            + IL    +L  V+REE EAI + F+  R + I  A   ID E+LI RE++VVT++ +G
Sbjct: 483 YLAILGDRVKLYAVMREEFEAIESEFATPRVSVIAPAADGIDDEDLIEREEMVVTVTVQG 542

Query: 547 YVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQL 606
           Y+K   L  + AQ RGGKG+S    K+ED +  L V +TH  +L FST GK YR+KV++L
Sbjct: 543 YIKRTPLESFRAQGRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSTAGKVYRLKVWRL 602

Query: 607 PLASRTARGKPIVNLLPLEENERITAILPVTEFSE---DKFIFMATGDGTVKKTSLDQFA 663
           P      RG+P++NLLPL   E I  +LP+ E  E   +  +  AT +GTV++ S+D FA
Sbjct: 603 PEGGPATRGRPMINLLPLAPGETIQTVLPLPEDEESWKELHVMFATANGTVRRNSMDAFA 662

Query: 664 NVRANGLIALNLRD--EDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPV 721
           NV +NG +A+   +  +D LIGV +   E +++L ++ G+ +RF  ++            
Sbjct: 663 NVPSNGKLAMRFDEGSDDRLIGVALLTEEDDVLLATRQGRAIRFAATDVREF-------- 714

Query: 722 LDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPK------------------ 763
                             RT+ GVRGM L DGD+V+SL + K                  
Sbjct: 715 ----------------QSRTSTGVRGMTLKDGDEVISLSILKGFDATTEERDDYLRAAPW 758

Query: 764 --------------------TEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSER 803
                                E  +LTV  NGYGK +S  +Y   GRG QG+ +I    R
Sbjct: 759 KENEATPAINSAERMAAFAEAEQFILTVCANGYGKISSAYDYRRTGRGGQGITNIDNIAR 818

Query: 804 NGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRI 863
           NG VVG+  VA  D  M++T+   L+R  ++ +  +GRN+ GV L   ++ E VV   RI
Sbjct: 819 NGLVVGSFPVAHEDHLMLVTDQAKLIRMGLSSMRVIGRNSAGVRLFNVAKDEHVVSTARI 878

Query: 864 DEIEESELPEGEEALVENDAPVAQDDDGEQ 893
           ++ E+       E  VE  AP A  + G +
Sbjct: 879 EDGEDDNAEATAEGTVEG-APEAAPETGSE 907