Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 923 a.a., DNA gyrase, subunit A from Pseudomonas putida KT2440

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 593/938 (63%), Positives = 724/938 (77%), Gaps = 70/938 (7%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M +LAKEI PVNIEDELR SYLDYAMSVIVGRALPD RDGLKPVHRRVL+AM+ LGNDWN
Sbjct: 1   MGELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRY+LVDGQGNFGS+DGD+AAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRM+K+AHELLADL KETVD+VPNYDGTEQIPAV+PT+IPNLL+NG+SGIAVGMAT
Sbjct: 121 RYTEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNLGEVIDGCLA IDN  +TIDELM +IPGPDFPTA +I+GR+GII+AY+TGRG++
Sbjct: 181 NIPPHNLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRI 240

Query: 241 YMRSKAEIET-DK-NGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKD 298
           YMR+++EIE  DK  G++ I+++E+PYQ+NKARLIEKIAELVKEKK+EGI+ LRDESDKD
Sbjct: 241 YMRARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKD 300

Query: 299 GMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRR 358
           GMRIVIE +R  V EVVLNNLY  TQLQ+ FGIN+VAL +G+P+L NLK++L+ FV HRR
Sbjct: 301 GMRIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRR 360

Query: 359 EVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGN 418
           EVVTRRT+FELRKARER HILEG A+AL+NID +I LI+ + TP+EAKE L++  W+   
Sbjct: 361 EVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSA 420

Query: 419 VAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYK 478
           V  M+ERAG D+ RPE L  QYG+ DGKYFL+ +QAQAILDLRLH+LTGLEHEK+L EY+
Sbjct: 421 VQVMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQ 480

Query: 479 QLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDV 538
           ++LE+I  L+ IL+S ERLMEVIREELEAIRA + D RRTEI  A+HD++  ++I  E+ 
Sbjct: 481 EILEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEER 540

Query: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
           VVT+SH GY K Q LS Y+AQRRGGKGKSAT +K+EDYIE LLVAN+H  +LLFS++GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPV--------------TEFSED-- 642
           Y  K Y++P ASR ARG+P+VNLLPLEE ERITA+L +               + +ED  
Sbjct: 601 YWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTV 660

Query: 643 ---------------------------KFIFMATGDGTVKKTSLDQFANVRANGLIALNL 675
                                       +IFMAT  GTVKKT L QFA  R+NGLIAL L
Sbjct: 661 LEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKL 720

Query: 676 RDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGV 735
           ++ D+LI   ITDG  E+M+FS  GKV+RF ES                          V
Sbjct: 721 KEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESV-------------------------V 755

Query: 736 RPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGV 795
           R MGR A GVRGMKL  G +++S+++P++   +LT +E G+GKRT LS++P +GRG QGV
Sbjct: 756 REMGRNARGVRGMKLGKGQRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGV 815

Query: 796 VSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGE 855
           +++    RNG ++GA+QV EG+E M+I++ GTLVRTRV EVS + RNTQGVTLI+ +  E
Sbjct: 816 IAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQGVTLIKLAADE 875

Query: 856 SVVGLQRIDEIEESELPEGEEALVENDAPVAQDDDGEQ 893
           ++VGL+RI E  E EL E  E   E    VA D++ E+
Sbjct: 876 TLVGLERIQEPSEDELDEVIETDEEGVEAVAPDNENEE 913