Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., Topoisomerase IV subunit A (EC 5.99.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  400 bits (1028), Expect = e-115
 Identities = 255/644 (39%), Positives = 367/644 (56%), Gaps = 79/644 (12%)

Query: 12  NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYK------- 64
           N+ +  + +YL+YA+SV+ GRALPDV DG KPV RR+L++M+ +G  ++   +       
Sbjct: 18  NLANYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMDRMGLGFSGPNRNTAARPV 77

Query: 65  KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124
           KSARVVGDV+G++HPHGD A YD +VRMAQ F+ RY L+DGQGNFGS DGD AAAMRYTE
Sbjct: 78  KSARVVGDVLGRFHPHGDQAAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTE 137

Query: 125 VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 184
            R+S+I   LL ++D+ TVD+VPNYDG+   P  LP ++P  L+NGASGIAVG+AT IP 
Sbjct: 138 ARLSRITTLLLDEIDEGTVDFVPNYDGSTVEPKQLPARLPFNLLNGASGIAVGLATEIPS 197

Query: 185 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMR 243
           HNL EV D C+A + N  +  DEL+  +PGPD+P    +IS    I DAY+TGRG + +R
Sbjct: 198 HNLREVADACVALVKNPKLADDELLTLLPGPDYPGGGQIISPASDIADAYRTGRGSLKVR 257

Query: 244 SKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISAL------------ 291
           ++ +IE    G+  ++V+E+P  V+  R++E+I EL   K   G  AL            
Sbjct: 258 ARWKIEDLARGQWQLVVTELPPGVSTQRVLEEIEELTNPKVKAGKKALTQEQTQLKASIL 317

Query: 292 ------RDESDKDG-MRIVIECKRDAVGEV-VLNNLYANTQLQTTFGIN--MVALDNGQP 341
                 RDES KD  +R++ E K   + +  ++  L A+T L+T+  IN  MV LD G+P
Sbjct: 318 MVLDGVRDESSKDAPVRLLFEPKSSRIEQQELITALLAHTSLETSAPINLTMVGLD-GRP 376

Query: 342 KLFNLKEMLKCFVDHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAAT 401
              +L++ML  +++ R+  +TRR+   L K  +R HILEG  L L NIDE+I +IR +  
Sbjct: 377 TQKSLRQMLTEWIEFRQGTITRRSQHRLTKVLDRIHILEGRQLVLLNIDEVIRIIRHSDE 436

Query: 402 PAEAKEGLIARGWDLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLR 461
           P                 AA++ER                     + L+++QA+ IL++R
Sbjct: 437 PK----------------AALIER---------------------FKLSDRQAEDILEIR 459

Query: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEIT 521
           L +L  LE  KI  E K+L EE   L  IL +   L  ++ +E+EA    F+D RRT I 
Sbjct: 460 LRQLARLEAIKIEQELKELREEQGKLEDILGNPGSLKRLMVKEIEADAKTFADERRTLIQ 519

Query: 522 AATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLL 581
           A    +  E  +  E V V +S +G+V+ +    +EA         +   K  D +    
Sbjct: 520 AEKKAV-AEIKVVDEPVTVVISSKGWVRARTGHGHEA--------GSFAFKAGDGLYGTF 570

Query: 582 VANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLE 625
              T D ++ F + G+ Y + V  LP A     G+PI  L+ LE
Sbjct: 571 ECRTVDTLITFGSNGRVYSVPVASLPGA--RGDGQPITTLIELE 612