Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 883 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  992 bits (2565), Expect = 0.0
 Identities = 516/912 (56%), Positives = 666/912 (73%), Gaps = 49/912 (5%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M+  AKE  P+++E+E+R SYLDYAMSVIVGRALPD RDGLKPVHRR L+AM+   NDWN
Sbjct: 1   MTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRALYAMHEQNNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           + ++KSAR+VGDV+GKYHPHGDSA+YDTIVRMAQPFSLR+MLVDGQGNFGS+DGD+AAAM
Sbjct: 61  RPFRKSARIVGDVMGKYHPHGDSAIYDTIVRMAQPFSLRHMLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVR++KIAHE+L D+DKETVD++PNYDG+ Q P+VLP+++PNLL+NG++GIAVGMAT
Sbjct: 121 RYTEVRLTKIAHEMLNDIDKETVDFIPNYDGSLQEPSVLPSRLPNLLVNGSAGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EV+D CL  +     TIDELM+ +P PDFPTA +I G  G+ D Y+TGRG+V
Sbjct: 181 NIPPHNLNEVVDACLHLLKAPEATIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGRV 240

Query: 241 YMRSKAEIE-TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
            MR+K   E  D+  ++ IIV E+PYQVNK  L E+IAELV EKK+EGIS ++DESDK G
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERIAELVHEKKIEGISHIQDESDKSG 300

Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
           MR+VIE KR  V EVVLNNLY  TQLQ TFGINMVAL +GQP+L NLK++++ F++HRRE
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLKDLIQVFLEHRRE 360

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
           VVTRRT+F LRKARER H+LEGLA+ALANIDE I +IR + TP  AK  L+ R WD   V
Sbjct: 361 VVTRRTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRQWDSQLV 420

Query: 420 AAMLERAGTDAA-------RPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHE 471
             ML RA  D         RPE LE ++G+  DG Y L+E QAQ +L +RL +LTGLE +
Sbjct: 421 REMLTRARADGGVVNADDYRPEGLEREFGMSSDGLYRLSETQAQEVLQMRLQRLTGLEQD 480

Query: 472 KILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSD----ARRTEITAATHDI 527
           KI+ EYK+++ EI  L+ ILA   R+  +I +EL  ++  F      ARR+EI     D+
Sbjct: 481 KIVAEYKEVMAEIDDLLDILAKPARVSTIISDELTLLKQEFGQTKLGARRSEIEHNAQDL 540

Query: 528 DMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHD 587
             E+LI   D+VVTLSH GY+K Q LS+Y +Q+RGG+GK AT  KE+D+I++L +ANTHD
Sbjct: 541 ATEDLITPTDMVVTLSHSGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHD 600

Query: 588 NILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVT----EFSEDK 643
            IL FS RG+ Y +KV+++P  SR +RG+PIVN+ PL+E E+I  +LP+T     F  D+
Sbjct: 601 YILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPSDR 660

Query: 644 FIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVV 703
           ++FMAT  GTVKKT+LD+F+N R  G+IA++L + D LIG  +TDG+ ++MLFS  GK V
Sbjct: 661 YVFMATSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 720

Query: 704 RFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPK 763
           RF E++                         VRPMGR A GVRGM + D   V++++V +
Sbjct: 721 RFDEND-------------------------VRPMGRNARGVRGMLIEDTQSVIAMLVAE 755

Query: 764 -TEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMI 822
             E  VLT T NGYGKRT ++EY   GRGT+G+++I+ SERNG VV A  V   DE M+I
Sbjct: 756 DEEQSVLTATINGYGKRTPIAEYTRHGRGTKGMIAIQQSERNGKVVAATLVHNDDEIMLI 815

Query: 823 TNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPE-GEEALVEN 881
           T+ G LVRTRV+E+ ++GR TQGVTLI   EG  + GLQRI E  ++ +PE G++A    
Sbjct: 816 TDKGVLVRTRVSEIREMGRATQGVTLIALDEGAELSGLQRIVE-NDANVPELGDDA---- 870

Query: 882 DAPVAQDDDGEQ 893
           +A  A DD G +
Sbjct: 871 NAADAADDAGTE 882