Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 744 a.a., DNA topoisomerase IV subunit A from Magnetospirillum magneticum AMB-1

 Score =  445 bits (1145), Expect = e-129
 Identities = 269/642 (41%), Positives = 382/642 (59%), Gaps = 62/642 (9%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           +I    + + L   YL YAMS IV R+LPDVRDGLKPVHRR+LFAM  L  D +  +KK 
Sbjct: 9   DIRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPSGGFKKC 68

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           ARVVGDVIGKYHPHGD AVYDT+VR+AQ F++RY LV+GQGNFG+IDGD+AAAMRYTE +
Sbjct: 69  ARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNIDGDNAAAMRYTEAK 128

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           +++IA  L+  LD+++VD+ P YDGTE+ P V+P+  PNLL NG++GIAVGMAT+IPPHN
Sbjct: 129 LTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSAGIAVGMATSIPPHN 188

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSK 245
           +GE+ D     I      +DEL+ ++PGPDFPT   L+  +  I +AY+TG+G   +R+K
Sbjct: 189 IGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITEAYRTGKGAFRVRAK 248

Query: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305
             +E   +G   I+++EIPYQV KA+LIEKIAEL+ EKK+  ++ +RDES +D +R+V+E
Sbjct: 249 WAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAED-IRLVLE 307

Query: 306 CKRDAV-GEVVLNNLYANTQLQTTFGINMVAL-----DNGQPKLFNLKEMLKCFVDHRRE 359
            +   V  E+V+  L+  T L++ F +NM  L      +  P + NLKE+L+ F+DHR  
Sbjct: 308 PRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMNLKEVLRAFLDHRMV 367

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
           V+ RR  F L K  +R  +LEG     A++D++I +IR A  P   K  LI         
Sbjct: 368 VLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEP---KAELIKT------- 417

Query: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
                                      + L+E QA+AIL++RL  L  L+  +I  E+ +
Sbjct: 418 ---------------------------FKLSEVQAEAILNMRLRSLNKLQELEIKTEHAE 450

Query: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRTEITAATHD--IDMEEL 532
           L  E A L  +LA   R    I  + +  R  F  A     RRTE+  A     + +E  
Sbjct: 451 LSAEKADLEALLADEPRRWAAIAAQNDETRKAFGGATALGKRRTELGDAPSAVVVPIEAY 510

Query: 533 IAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLF 592
           + RE + + LS +G+++        A +       A K KE D +  LL A T D IL+F
Sbjct: 511 VEREAITMVLSEKGWIR--------ALKGHSDAPEALKFKEGDQLGHLLKAWTTDKILVF 562

Query: 593 STRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634
           +T G+ Y +   +LP  S    G+P+  ++ L  +  I A++
Sbjct: 563 ATDGRFYTIGGDKLP--SGRGHGEPLRLMIDLAGDVDIAAVM 602