Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 752 a.a., Topoisomerase IV subunit A (EC 5.99.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  402 bits (1032), Expect = e-116
 Identities = 259/714 (36%), Positives = 406/714 (56%), Gaps = 68/714 (9%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           MSD+A+ +    + +   ++YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG +  
Sbjct: 1   MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAT 57

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAA 119
             +KKSAR VGDV+GKYHPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AA
Sbjct: 58  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117

Query: 120 MRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMA 179
           MRYTE R+SK A  LL++L + T D+VPN+DGT Q P +LP ++PN+L+NG +GIAVGMA
Sbjct: 118 MRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 177

Query: 180 TNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRG 238
           T+IPPHNL EV    +  I+    T+D+L+D + GPD+PT A +I+ R  I   Y+ GRG
Sbjct: 178 TDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRG 237

Query: 239 KVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKD 298
            V MR+   + T ++G   +++S +P+QV+ A+++E+IA  ++ KK+  +  LRDESD +
Sbjct: 238 SVRMRA---VWTKEDG--AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHE 292

Query: 299 G-MRIVIECKRDAVG-EVVLNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFV 354
              R+VI  + + V  E V+N+L+A T L+ ++   +NM+ LD G+P + NL E+L  ++
Sbjct: 293 NPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILTEWL 351

Query: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGW 414
             RR+ V RR  + L K  +R HILEGL +A  NIDE+IE+IR   +  E K  L++R  
Sbjct: 352 AFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---SEDEPKPALMSR-- 406

Query: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKIL 474
                                           + ++E QA+AIL+L+L  L  LE  KI 
Sbjct: 407 --------------------------------FGISETQAEAILELKLRHLAKLEEMKIR 434

Query: 475 DEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEE--L 532
            E  +L +E   L  ILAS  ++  ++++EL+A    + D RR+ +        M E  +
Sbjct: 435 GEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDM 494

Query: 533 IAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLF 592
           +  E V + LS  G+V+     D +A             K  D  +  +   ++  ++  
Sbjct: 495 LPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAAVKGKSNQPVVFI 546

Query: 593 STRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDG 652
            T G++Y +    LP  S   +G+P+   L L     +  +L      +D+ + MA+  G
Sbjct: 547 DTTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVEHMLME---GDDQKLLMASDAG 601

Query: 653 TVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIML-FSKFGKVVRF 705
                + +        G   + L +   ++   + + E +++L  ++ G+++ F
Sbjct: 602 YGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 543 SHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMK 602
           S  GY      +D  A+ R GK    T  +    +  L++ + HD +L  +  G+     
Sbjct: 598 SDAGYGFVCTFNDLVARNRAGK-TLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFP 656

Query: 603 VYQLPLASRTARGKPIVNL 621
           V  LP  S+  +G  I+N+
Sbjct: 657 VDSLPQLSK-GKGNKIINI 674