Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 878 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1315 bits (3403), Expect = 0.0
 Identities = 673/895 (75%), Positives = 774/895 (86%), Gaps = 30/895 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           MSDLA+EITPVNIE+EL+SSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMNVLGNDWN
Sbjct: 1   MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM
Sbjct: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTE+R++KIAHEL+ADL+KETVD+V NYDGTE+IP V+PTKIPNLL+NG+SGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI+GCLAYIDNE I+I+ LM++IPGPDFPTAA+I+GR+GI +AY+TGRGKV
Sbjct: 181 NIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240

Query: 241 YMRSKAEIETD-KNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
           Y+R++AE+E D K G+ETIIV EIPYQVNKARLIEKIAELVK+K+VEGISALRDESDKDG
Sbjct: 241 YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG 300

Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
           MRIVIE KRDAVGEVVLNNLY+ TQLQ +FGINMVAL +GQPK+ NLK+++  FV HRRE
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRRE 360

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
           VVTRRTIFELRKAR+RAHILE LA+ALANID IIELIRRA TPAEAK  LI+R WDLGNV
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNV 420

Query: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
           AAMLERAG DAARPEWLEP++G+RDG+Y+LTEQQAQAILDLRL KLTGLEHEK+LDEYK+
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480

Query: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 539
           LLE+IA L+HIL S +RLMEVIREE+E IR  F D RRTEITA + DI++E+LI++EDVV
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVV 540

Query: 540 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 599
           VTLSH+GYVKYQ L+DYEAQRRGGKGKSA ++KEED+I+RLLVANTHD IL FS+RG+ Y
Sbjct: 541 VTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 600

Query: 600 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSL 659
            MKVYQLP ASR ARG+PIVNLLPLE NERITAILPV E+ E   +FMAT  GTVKKT+L
Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTAL 660

Query: 660 DQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQ 719
            +F+  R+ G+IA+NL D D LIGVD+T G  E+MLFS  GKVVRFKE            
Sbjct: 661 TEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKED----------- 709

Query: 720 PVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKR 779
                          VR MGRTA GVRG+KLA  D+VVSLI+P+ EG +LTVT+NGYGKR
Sbjct: 710 --------------AVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKR 755

Query: 780 TSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQV 839
           T+  EYPTK R TQGV+SIKV+ERNGSVVGAVQV + D+ MMIT+AGTLVRTRV+E+S V
Sbjct: 756 TAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVV 815

Query: 840 GRNTQGVTLIRTSEGESVVGLQRIDE-IEESELPEGEEALVEND---APVAQDDD 890
           GRNTQGV LIRT+E E+VVGLQR+ E +++ EL   + ++ E D   AP A+ DD
Sbjct: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDD 870