Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 746 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Kangiella aquimarina DSM 16071

 Score =  398 bits (1023), Expect = e-115
 Identities = 254/652 (38%), Positives = 380/652 (58%), Gaps = 72/652 (11%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG      YKKSAR VGDV+GK+HP
Sbjct: 18  AYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHP 77

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R++  +  LL++L
Sbjct: 78  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLAAYSEVLLSEL 137

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TV+++PN+DGT   P VLP +IPNLL+NG +GIAVGMAT+IPPHNL EV   C+  +
Sbjct: 138 GQGTVNWIPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATDIPPHNLSEVGKACIHLL 197

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           +N    +++L+++I GPDFPT A +I+ R  I++ Y+ GRG + MR++ E E     +  
Sbjct: 198 ENPKSDVEDLLEFIQGPDFPTDAEIITPRSEILEVYEKGRGSIRMRARFEKE-----EGD 252

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EVV 315
           I+++ +P+QV+ A+++E+IA  ++ KK+  +S LRDESD +   R+VIE + + V  E +
Sbjct: 253 IVITALPHQVSGAKVLEQIAAQMQAKKLPMVSDLRDESDHENPTRLVIEPRSNRVDVEEL 312

Query: 316 LNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARE 374
           + +L+A T L+ T+ +NM  +  +G+P++ NL+ MLK +++ R E V RR    L K  +
Sbjct: 313 MRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFRHETVRRRLQHRLDKVMD 372

Query: 375 RAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPE 434
           R HIL+GL +A  NIDE+I +IR    P                   ++ER         
Sbjct: 373 RLHILDGLLIAYLNIDEVIHIIRTEDKPK----------------LKLMER--------- 407

Query: 435 WLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAST 494
                       + L+++QA+AIL+L+L  L  LE  KI  E  +L +E   L   L S 
Sbjct: 408 ------------FDLSDRQAEAILELKLRHLAKLEEMKIKGEQAELEDEADWLQLTLGSK 455

Query: 495 ERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLSHEGYVKYQL 552
           +R+  +I++E+E +   F D RR+ I        +   EL+  E V V LS +G+V+   
Sbjct: 456 QRMKTLIKKEIEEVVEQFGDERRSPIVERKEAKALSETELLPTEPVTVILSEKGWVRCAK 515

Query: 553 LSDYEA----QRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPL 608
             D +A     R G K   + + K   Y            + L ST G+T+ +    LP 
Sbjct: 516 GHDVDAVGMNYRSGDKYLDSARGKSNQYA-----------VFLDST-GRTFSLLANTLP- 562

Query: 609 ASRTARGKPIVNLL-PLEENERITAILPVTEFSEDKFIFMA-TGDGTVKKTS 658
            S    G+P+   + P+   E +  ++      +DKF+F    G G V K S
Sbjct: 563 -SARGLGEPVTGRVNPIAGAEFMATLMGE---DDDKFLFATDAGYGFVAKFS 610