Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 757 a.a., DNA topoisomerase IV subunit A from Erwinia tracheiphila SCR3

 Score =  402 bits (1033), Expect = e-116
 Identities = 251/641 (39%), Positives = 374/641 (58%), Gaps = 64/641 (9%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG + +  +KKSAR VGDV+GKYHP
Sbjct: 21  AYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHP 80

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+SK A  LL++L
Sbjct: 81  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSEL 140

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TVDY+PN+DGT Q P++LP ++PN+L+NG +GIAVGMAT+IPPHNL EV    +  I
Sbjct: 141 GQGTVDYIPNFDGTLQEPSILPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIKLI 200

Query: 199 DNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           D+ A T+DELMD + GPD+PT A +I+ R  I   Y+ GRG V MR+  + E        
Sbjct: 201 DSPAATLDELMDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSVRMRAVWKREDGD----- 255

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EVV 315
           ++++ +P+QV+ AR++E+IA  ++ KK+  +  LRDES+ +   R+VI  + + V  + V
Sbjct: 256 VVITALPHQVSGARVLEQIATQMRNKKLPMVEDLRDESNHENPTRLVIVPRSNRVDMDQV 315

Query: 316 LNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKAR 373
           +N+L+A T L+ ++   +NM+ LDN +P + NL E++  ++  RRE V RR  F L K  
Sbjct: 316 MNHLFATTDLEKSYRVNLNMIGLDN-RPAVKNLLEIISEWLVFRRETVRRRLSFRLEKVL 374

Query: 374 ERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARP 433
           +R HILEGL +A  NIDE+I +IR                               D  +P
Sbjct: 375 KRLHILEGLLIAFLNIDEVIHIIR-----------------------------SEDEPKP 405

Query: 434 EWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAS 493
           E +         ++ ++E QA+AIL+L+L  L  LE  KI  E  +L +E   L  ILAS
Sbjct: 406 ELM--------ARFGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDKLQDILAS 457

Query: 494 TERLMEVIREELEAIRAGFSDARRTEI--TAATHDIDMEELIAREDVVVTLSHEGYVKYQ 551
             ++  ++++EL+A    + D RR+ +        I   EL+  E V + LS  G+V+  
Sbjct: 458 ERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAISENELVPSEPVTIVLSQMGWVRSA 517

Query: 552 LLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR 611
              D +    GG        K  D         ++  ++   + G++Y +    LP  S 
Sbjct: 518 KGHDIDP---GG-----LSYKAGDGYRAAARGKSNQPVVFIDSTGRSYALDPVTLP--SA 567

Query: 612 TARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDG 652
             +G+P+   L L     +  +L     S+++ + MA+  G
Sbjct: 568 RGQGEPLTGKLTLPPGAIMEQVLME---SDEQSLLMASDAG 605