Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Erwinia tracheiphila SCR3

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 669/899 (74%), Positives = 770/899 (85%), Gaps = 31/899 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           MSDLA+EITPVNIE+EL++SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMNVLGNDWN
Sbjct: 1   MSDLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRYMLVDGQGNFGS+DGDSAAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRM+KIAHELLADL+KETVDYV NYDGTEQIP V+PTKIPNLL+NGASGIAVGMAT
Sbjct: 121 RYTEVRMAKIAHELLADLEKETVDYVNNYDGTEQIPDVMPTKIPNLLVNGASGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI+GCLAYI +E I+++ LM++I GPDFPTAA+I+GR+GI +AY+TGRGK+
Sbjct: 181 NIPPHNLTEVINGCLAYIADENISLEALMEHISGPDFPTAAIINGRRGIEEAYRTGRGKI 240

Query: 241 YMRSKAEIETD-KNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
           Y+R++ E+E D K G+ETII+ EIPYQVNKARLIEK+AELVKEK++EGI ALRDESDKDG
Sbjct: 241 YIRARGEVEVDAKTGRETIIIHEIPYQVNKARLIEKMAELVKEKRLEGIGALRDESDKDG 300

Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
           MRIVIE KRDAVGEVVLNNLY+ TQLQT+FGINMVAL  GQPK+  LKE+L+ FV HRRE
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKEILEAFVRHRRE 360

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
           VVTRRTIFELRKAR+RAHILE LA+ALANID IIELIRRA TPAEAK GL+AR W LGNV
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVARPWALGNV 420

Query: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
           +AMLERAG +AARPEWLE ++GIRDG Y+LTEQQAQAILDLRL KLTGLEHEK+LDEYK 
Sbjct: 421 SAMLERAGDNAARPEWLEDEFGIRDGNYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKA 480

Query: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 539
           LLE+IA L+HIL S ERLMEVIREELE IR  F DARRTEITA + DI++E+LI +EDVV
Sbjct: 481 LLEQIAELIHILESAERLMEVIREELELIRDQFGDARRTEITANSADINIEDLINQEDVV 540

Query: 540 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 599
           VTLS++GYVKYQ L+DYEAQRRGGKGKSA ++KEED+I+RLLVANTHD IL FS+RG+ Y
Sbjct: 541 VTLSNQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 600

Query: 600 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSL 659
            MKVYQLP ASR ARG+PIVNLLPLE NERITAILPV E++E   IFMAT  GTVKKT+L
Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGTVKKTTL 660

Query: 660 DQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQ 719
            +F+  R+ G+IALNLR++D LIGV +T+G+ E MLFS  GKVVRF E            
Sbjct: 661 QEFSRPRSAGIIALNLREDDELIGVALTNGQDEAMLFSAAGKVVRFSE------------ 708

Query: 720 PVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKR 779
                        + VR MGRTA+GVRG+KLA+GD+VVSLIVP+ EG +LTVT+NGYGKR
Sbjct: 709 -------------QAVRTMGRTASGVRGIKLAEGDRVVSLIVPRDEGAILTVTQNGYGKR 755

Query: 780 TSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQV 839
           T+  EYPT+ R TQGV+SIKV+ERNG V+GAVQV + D+ MMIT+AGTLVRTRV+EVS V
Sbjct: 756 TNNIEYPTRSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAGTLVRTRVSEVSVV 815

Query: 840 GRNTQGVTLIRTSEGESVVGLQRIDE-IEESELPEGEEALVEND----APVAQDDDGEQ 893
           GRNTQGV LIRT++ ESVVGLQR+ E + E EL   + ++ E D      V QDDD  +
Sbjct: 816 GRNTQGVILIRTADDESVVGLQRVAEPVAEEELDAIDGSVAEGDEDITPEVEQDDDAPE 874