Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 875 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Escherichia coli ECRC62

 Score = 1291 bits (3341), Expect = 0.0
 Identities = 659/896 (73%), Positives = 767/896 (85%), Gaps = 27/896 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           MSDLA+EITPVNIE+EL+SSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMNVLGNDWN
Sbjct: 1   MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM
Sbjct: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTE+R++KIAHEL+ADL+KETVD+V NYDGTE+IP V+PTKIPNLL+NG+SGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI+GCLAYID+E I+I+ LM++IPGPDFPTAA+I+GR+GI +AY+TGRGKV
Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240

Query: 241 YMRSKAEIETD-KNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
           Y+R++AE+E D K G+ETIIV EIPYQVNKARLIEKIAELVKEK+VEGISALRDESDKDG
Sbjct: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300

Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
           MRIVIE KRDAVGEVVLNNLY+ TQLQ +FGINMVAL +GQPK+ NLK+++  FV HRRE
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
           VVTRRTIFELRKAR+RAHILE LA+ALANID IIELIR A TPAEAK  L+A  W LGNV
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420

Query: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
           AAMLERAG DAARPEWLEP++G+RDG Y+LTEQQAQAILDLRL KLTGLEHEK+LDEYK+
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480

Query: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 539
           LL++IA L+ IL S +RLMEVIREELE +R  F D RRTEITA + DI++E+LI +EDVV
Sbjct: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540

Query: 540 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 599
           VTLSH+GYVKYQ LS+YEAQRRGGKGKSA ++KEED+I+RLLVANTHD+IL FS+RG+ Y
Sbjct: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600

Query: 600 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSL 659
            MKVYQLP A+R ARG+PIVNLLPLE++ERITAILPVTEF E   +FMAT +GTVKKT L
Sbjct: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660

Query: 660 DQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQ 719
            +F  +R  G +A+ L D D LIGVD+T GE E+MLFS  GKVVRFKES           
Sbjct: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKES----------- 709

Query: 720 PVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKR 779
                          VR MG    GVRG++L +GD+VVSLIVP+ +G +LT T+NGYGKR
Sbjct: 710 --------------SVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR 755

Query: 780 TSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQV 839
           T+++EYPTK R T+GV+SIKV+ERNG VVGAVQV + D+ MMIT+AGTLVRTRV+E+S V
Sbjct: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815

Query: 840 GRNTQGVTLIRTSEGESVVGLQRIDE-IEESELPEGEEALVENDAPVAQDDDGEQE 894
           GRNTQGV LIRT+E E+VVGLQR+ E ++E +L   + +  E D  +A + D + E
Sbjct: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDE 871