Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., DNA topoisomerase IV subunit A from Dickeya dadantii 3937

 Score =  389 bits (998), Expect = e-112
 Identities = 243/624 (38%), Positives = 358/624 (57%), Gaps = 61/624 (9%)

Query: 19  SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYH 78
           ++YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG   +  +KKSAR VGDV+GKYH
Sbjct: 20  NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYH 79

Query: 79  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKIAHELLAD 137
           PHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+SK A  LL +
Sbjct: 80  PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGE 139

Query: 138 LDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAY 197
           L + TVDYVPN+DGT Q P +LP ++PN+L+NG +GIAVGMAT+IPPHN+ EV    +A 
Sbjct: 140 LGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREVAAAAVAL 199

Query: 198 IDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKE 256
           ID     +D L+ Y+ GPDFPT A +I+ R  I   Y++GRG V MR+       K    
Sbjct: 200 IDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYESGRGSVRMRA-----VWKKEDG 254

Query: 257 TIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EV 314
           +++++ +P+QV+ AR++E+IA  ++ KK+  I  LRDESD +   R+V+  + + +  ++
Sbjct: 255 SVVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTRLVLVPRSNRIDLDL 314

Query: 315 VLNNLYANTQLQTTFGI--NMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKA 372
           V+N+L+A T L+ ++ I  NM+ LD G+P +  L+E+L  ++  RR+ V RR  F L K 
Sbjct: 315 VMNHLFATTDLEKSYRINMNMIGLD-GRPSVKGLREILTEWLAFRRDTVRRRLNFRLDKV 373

Query: 373 RERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAAR 432
            +R HILEGL +A  NIDE+I +IR    P   K  L+A                     
Sbjct: 374 LKRLHILEGLLIAFLNIDEVIHIIRNEDEP---KPVLMA--------------------- 409

Query: 433 PEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILA 492
                        K+ L++ QA+AIL+L+L  L  LE  KI  E   L +E   +  +LA
Sbjct: 410 -------------KFGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLA 456

Query: 493 STERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEE--LIAREDVVVTLSHEGYVKY 550
           S  ++  ++++E++     + D RR+ +        M E  L   E V + LS  G+V+ 
Sbjct: 457 SERKMNSLLKKEIQEDAKAYGDERRSPLHERGEAKAMSEHDLSPSEPVTIVLSEMGWVRS 516

Query: 551 QLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLAS 610
               D +         S    K  D         ++  ++   + G++Y +    LP  S
Sbjct: 517 AKGHDID--------PSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLP--S 566

Query: 611 RTARGKPIVNLLPLEENERITAIL 634
              +G+P+   L L     I  +L
Sbjct: 567 ARGQGEPLTGKLTLPPGATIEQVL 590