Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 876 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  164 bits (416), Expect = 2e-44
 Identities = 113/354 (31%), Positives = 187/354 (52%), Gaps = 34/354 (9%)

Query: 21  YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80
           +LDYA  VI+ RA+P + DG KPV RR+L AM  + +     + K A ++G  + +YHPH
Sbjct: 30  FLDYASYVILERAVPAIEDGFKPVQRRILHAMKEMDDG---RFNKVANIIGQTM-QYHPH 85

Query: 81  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEVRMSKIAHELLADLD 139
           GD+++ D IV + Q    + +L++ QGN+G I  GD AAA RY E R+SK A E++   +
Sbjct: 86  GDASISDAIVNLGQ----KDLLIETQGNWGDIRTGDGAAAARYIEARLSKFALEVV--FN 139

Query: 140 KETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYID 199
            +T D+  +YDG ++ P  LP K P LL  G  GIAVG++T I PHN  E+I+  +  + 
Sbjct: 140 PQTTDWQVSYDGRKREPVTLPVKFPLLLAQGVEGIAVGLSTKILPHNFCELINASVDVLK 199

Query: 200 NEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTG--RGKVYMRSKAEIETDKNGKET 257
            +   I         PDFPT  L          Y  G   GK+ +R++ E   + +GK +
Sbjct: 200 GKKANI--------VPDFPTGGLAD-----FSEYNEGLRGGKIKVRARIE---EGDGK-S 242

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECKRDAVGEVVLN 317
           +++ +IP+      LI+ I +   + K++ I  + D + KD + I +        ++ ++
Sbjct: 243 LLIKDIPFGTTTTSLIDSIIKANDKGKIK-IKKVVDNTAKD-VEIQVFLAPGQSPDMTID 300

Query: 318 NLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRK 371
            LYA T  + +   N   + + +P    + ++L       + ++ R    E+RK
Sbjct: 301 ALYAFTDCEQSISPNACVIIDDKPVFMGVNDILAYNTTQTKALLKRE--LEIRK 352