Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 904 a.a., DNA gyrase subunit A from Alteromonas macleodii MIT1002

 Score = 1332 bits (3446), Expect = 0.0
 Identities = 677/886 (76%), Positives = 774/886 (87%), Gaps = 8/886 (0%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           MSD AKEI PVNIE+EL++SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMN L ND+N
Sbjct: 1   MSDNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS+DGDSAAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRM+KIAHELLADLDKETVD+VPNYDGTE IP VLPTK+PNLL+NG+SGIAVGMAT
Sbjct: 121 RYTEVRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI+GC+A I + +ITID+LM +IPGPDFPTAA+ISGRKGI DAY+TGRGK+
Sbjct: 181 NIPPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKI 240

Query: 241 YMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
           Y+R+KAEIETD NGKETI+V+EIPYQVNKARLIEKIAELVKEK++EG+SALRDESDKDGM
Sbjct: 241 YLRAKAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGM 300

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           RIVIE KR+   EV+LN+LYANTQLQT FGINMVALDNGQPK+FNLKE L+CF+ HRREV
Sbjct: 301 RIVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREV 360

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           VTRRT+FELRKAR+RAHILEGLA+ALANID IIELI+ + +PA+AK+ L+A+GWDLG+VA
Sbjct: 361 VTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVA 420

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
            MLERAG DAARP+WL P++GIRDGKY+LTEQQAQAILDLRLHKLTGLEHEKIL+EYKQL
Sbjct: 421 QMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQL 480

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
           LE IA L+HIL S ERLMEVI+EELE +R  F D RRTEITAA+HDID+E+LI +EDVVV
Sbjct: 481 LEIIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIEQEDVVV 540

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
           TLS EGYVKYQ L+DYEAQRRGG+GKSATKMK+ED+IERLLVANTHD+IL FSTRG+ Y 
Sbjct: 541 TLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYW 600

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +KVYQLP ASR ARG+PIVN+LPLEENERITAILP+ EF E KF+ MAT +GTVKKT L 
Sbjct: 601 LKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTVKKTDLS 660

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
            ++  R++G+IA+NL + D LIGVDIT G+ +IMLFS  GKVVRF E    +   E G+ 
Sbjct: 661 LYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDS---ETGEV 717

Query: 721 VLD-ENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKR 779
             D E G+   +   +RPMGRTA GVRG++L DG +VVSLIVPK +G +LT TENG+GKR
Sbjct: 718 KRDPETGE---ELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGPILTATENGFGKR 774

Query: 780 TSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQV 839
           T L +YP K R TQGVVSIKVSERNG VVGAVQV E +E M+I++ GTLVRTRV EVS V
Sbjct: 775 TPLEDYPAKSRATQGVVSIKVSERNGKVVGAVQVDETNEIMLISDQGTLVRTRVGEVSVV 834

Query: 840 GRNTQGVTLIRTSEGESVVGLQRIDEIEE-SELPEGEEALVENDAP 884
           GRNTQGV LIRT EGE VVGLQRI+E+EE  E  E    ++ +DAP
Sbjct: 835 GRNTQGVRLIRTVEGEHVVGLQRIEEVEELQEFDEDGNLIISDDAP 880