Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 761 a.a., DNA topoisomerase 4 subunit A from Alteromonas macleodii MIT1002

 Score =  389 bits (1000), Expect = e-112
 Identities = 233/634 (36%), Positives = 370/634 (58%), Gaps = 63/634 (9%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG + N  YKKSAR VGDV+GK+HP
Sbjct: 24  AYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLNANAKYKKSARTVGDVLGKFHP 83

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE ++S+ +  LL +L
Sbjct: 84  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSRFSEVLLNEL 143

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TVD+VPN+DGT   P+VLP ++P++L+NG +GIAVGMAT+IPPHN+ E+ + C   +
Sbjct: 144 GQGTVDWVPNFDGTLNEPSVLPARLPHILLNGVTGIAVGMATDIPPHNVRELANACAMLL 203

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           DN    + ++++++ GPD+PT A +I+ +  I   Y+TGRG + MR+   +  ++NG   
Sbjct: 204 DNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQKLYETGRGSIKMRA---VYMEENG--D 258

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVGEV-V 315
           ++++ +P+Q + A+++E+IA  ++ KK+  +S LRDESD +   R+VI  + + +    +
Sbjct: 259 VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRLVITPRSNRIDVTQL 318

Query: 316 LNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKAR 373
           + +L+A T L+  +   +NM+ LD G+P++ +L+ +L  ++ +R++ VTRR  + L K  
Sbjct: 319 MQHLFATTDLEKNYRVNLNMIGLD-GRPQVKDLRTILSEWLQYRKDTVTRRLQYRLDKVL 377

Query: 374 ERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARP 433
            R HILEGL +A  NIDE+IE+IR                               D  +P
Sbjct: 378 ARLHILEGLLIAFLNIDEVIEIIRT-----------------------------YDKPKP 408

Query: 434 EWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAS 493
           E +         ++ L++ QA+AIL+L+L  L  LE  KI  E  +L EE   L  +L S
Sbjct: 409 ELM--------ARFGLSDTQAEAILELKLRHLAKLEEMKIKGEQDELAEERDKLQQLLGS 460

Query: 494 TERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLSHEGYVKYQ 551
             RL  +I++E+ A    + D RR+ I        +  +EL+  E V V LS +G+ +  
Sbjct: 461 DRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKELVPAESVTVVLSEKGWARCA 520

Query: 552 LLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR 611
              D +A+    K   A     E          ++   +   + G+T+    + LP  S 
Sbjct: 521 KGHDIDAEGLSYKAGDAYLSSAE--------GKSNQPAVFMDSSGRTFSCDAHGLP--SA 570

Query: 612 TARGKPIVNLLPLEENERITAILPVTEFSEDKFI 645
            ++G+P+     +   E    ++   +  E KF+
Sbjct: 571 RSQGEPLTGRFSIVGGESFQHVIMAQD--ESKFL 602