Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 750 a.a., topoisomerase IV subunit A from Agrobacterium fabrum C58

 Score =  424 bits (1089), Expect = e-122
 Identities = 272/736 (36%), Positives = 408/736 (55%), Gaps = 81/736 (11%)

Query: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67
           I PV+++  L   YL YA+S I+ RALPDVRDGLKPVHRR++ AM+ +G   N A+KK A
Sbjct: 15  IHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKKCA 74

Query: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127
           R+VGDVIGK+HPHGD +VYD +VR+AQ FS RY +VDGQGNFG+IDGD AAA RYTE RM
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNIDGDGAAAYRYTEARM 134

Query: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187
           + +A  LL  + ++ VD+   Y+  ++ P VLP   PNLL NGASGIAVGMAT+IPPHN 
Sbjct: 135 TDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKA 246
            E+ D  L  I +   T+++L+++IPGPD PT   +I  R+ I+DAYKTGRG   +R+K 
Sbjct: 195 HELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILDAYKTGRGGFRVRAKW 254

Query: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306
           E E    G   I+++EIP+QV K+RLIEKIAEL+  +K+  +  +RDES +D   +++  
Sbjct: 255 ETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDVRDESAEDVRIVLVPK 314

Query: 307 KRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRRT 365
            R     +++ +L+  + L++   +NM  L  G+ PK+  L E+L  ++ HR++V+ RR+
Sbjct: 315 NRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEVLSEWLAHRKDVLVRRS 374

Query: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425
              L     R  IL GL +A  N+DE+I +IR    P   K+ ++AR             
Sbjct: 375 RHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEP---KQVMMAR------------- 418

Query: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485
                                + LT+ QA+AIL++RL  L  LE  +I  E+  L +E +
Sbjct: 419 ---------------------WSLTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKS 457

Query: 486 ALMHILASTERLMEVIREELEAIRAGFSDA-----RRTEITAATHDIDME----ELIARE 536
            +  +LAS ++  + +  E+  ++  ++ A     RRT+   A  D D+E     +I +E
Sbjct: 458 EIEGLLASDDKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAP-DADIEAIQQAMIEKE 516

Query: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596
            V + +S +G+++        A +      SA   KE D  +    A T D +LL +T G
Sbjct: 517 PVTIVISQKGWIR--------ALKGHMSDTSALTFKEGDGPKLAFPAQTTDKLLLLTTGG 568

Query: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED---KFIFMATGDGT 653
           K Y +   +LP       G+PI  ++ +E ++ I     +T F  D   K + ++TG   
Sbjct: 569 KAYTLGADKLP--GGRGHGEPIRIMVDMENDQDI-----LTAFVHDPSRKLLLVSTGGNG 621

Query: 654 VKKTSLDQFANVRANGLIALNLRDEDSLIGVDITD------GESEIMLFSKF-------- 699
                 +  AN R    I      +++ + V +T       GE+  +L            
Sbjct: 622 FIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTGDHVAVVGENRKLLAFPLSQVPEMSR 681

Query: 700 GKVVRFKESEETAVVD 715
           GK VR +  ++  VVD
Sbjct: 682 GKGVRLQRYKDGGVVD 697