Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 739 a.a., DNA topoisomerase 4 subunit A from Acinetobacter radioresistens SK82

 Score =  370 bits (950), Expect = e-106
 Identities = 248/718 (34%), Positives = 393/718 (54%), Gaps = 65/718 (9%)

Query: 1   MSDLAKEITPV-NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDW 59
           M+ LA   T   ++ +    +YL+YAM VI+ RALP + DGLKPV RR+++AM+ LG   
Sbjct: 1   MTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKH 60

Query: 60  NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAA 118
           +   KKSAR VGDV+GKYHPHGDSA Y+ +V MAQPFS RY  ++GQGN+GS D   S A
Sbjct: 61  SGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFA 120

Query: 119 AMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGM 178
           AMRYTE ++S+ +  LL++L + TV++  N+DG+ + P  LP ++PN+L+NG +GIAVGM
Sbjct: 121 AMRYTEAKLSQYSEVLLSELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGM 180

Query: 179 ATNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGR 237
           AT+IPPHNL EVI G +A I N   +  +L +YIPGPD PT A +I+ +  ++    TGR
Sbjct: 181 ATDIPPHNLREVIKGTIALIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGR 240

Query: 238 GKVYMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDK 297
           G   MR+   +E     K  II++E+PYQV+ +++I +IA+ ++ KK+  +S LRDESD 
Sbjct: 241 GSYRMRAVYTVE-----KNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDH 295

Query: 298 -DGMRIVIECKRDAV-GEVVLNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCF 353
            +  R+VI  + + V  + V+++L+A T L++++   +NM+  D G+P++ +++++L  +
Sbjct: 296 VNPTRLVIVLRSNRVDADTVMSHLFATTDLESSYRVNLNMIGAD-GRPQVKSIRKILLEW 354

Query: 354 VDHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARG 413
           +  R+E VTRR  + L K  +R HIL GL +A  +ID +I +IR    P           
Sbjct: 355 IGIRKETVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDHPK---------- 404

Query: 414 WDLGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKI 473
                 A +++                      + + E QA+AIL+L+L  L  L+  +I
Sbjct: 405 ------AVLIQ---------------------TFKIDETQAEAILELKLRHLAKLQEMEI 437

Query: 474 LDEYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEE-- 531
             E  +L    A +   LA+ E L  +I  EL+     F D RR+ I      + M E  
Sbjct: 438 RQEQDELSARAALIREQLANPESLKNLIIGELKEDAKKFGDERRSPIVEREGAVQMREQD 497

Query: 532 LIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILL 591
           LI  E V V LS  G+++    +D +A++   +         + Y+       ++  + +
Sbjct: 498 LIPAEPVTVILSEAGWIRSAKGADVDAEKLNYRA-------GDQYLSH-ASGKSNQRVYI 549

Query: 592 FSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD 651
               G++Y + +  LP  S    G+P+ + L          IL V E  +D+ I   +  
Sbjct: 550 LDETGRSYALAINSLP--SARGLGEPLSSKLSPANGVSFIQIL-VEE--DDQEIIAISSK 604

Query: 652 GTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESE 709
           G   KT   Q       G   L++ +    + + +    S + L +  G+++    SE
Sbjct: 605 GYGFKTQAKQLDTNAKAGKAFLSIPEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSE 662



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 31/160 (19%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKL--ADGDQVVSLIVPKTEGDVLTVTENGYGK 778
           +LDE G+         P  R        KL  A+G   + ++V + + +++ ++  GYG 
Sbjct: 549 ILDETGRSYALAINSLPSARGLGEPLSSKLSPANGVSFIQILVEEDDQEIIAISSKGYGF 608

Query: 779 RTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQ 838
           +T   +  T  +  +  +SI      G  +  +   +     ++T+ G L+   V+E+  
Sbjct: 609 KTQAKQLDTNAKAGKAFLSI---PEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSELPS 665

Query: 839 VGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEAL 878
           + +  +G  LI+  + E ++ +  ++  E  ++  G++ L
Sbjct: 666 LNKG-KGNKLIQLEQDEQLLSMTTLNLNEIIQVIAGQKIL 704