Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  238 bits (607), Expect = 5e-67
 Identities = 136/347 (39%), Positives = 209/347 (60%)

Query: 190 ATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLGKDELGIVAQRINN 249
           +TL+  LV +   +VI+R + +P+     V++++A GDL+  I V  +DELG++ Q I  
Sbjct: 293 STLLALLVGVIAALVITRQITRPIQETLAVVERIASGDLSHNIQVTRRDELGVLQQGIQR 352

Query: 250 SIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATVAD 309
               + + +       + +A AA  +++  E+TS  V SQ+ +  Q+ATAM++MTATV +
Sbjct: 353 MGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQVATAMHEMTATVQE 412

Query: 310 VAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEV 369
           VA +AE  +    DA  +A  GDK V  ++  I  L+ E+  +TD +  L++   +I  V
Sbjct: 413 VARNAEQASLAAADADGQARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQESNKIGSV 472

Query: 370 TSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRL 429
             VI  ++EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RT  ST+EI+ ++  L
Sbjct: 473 MDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGL 532

Query: 430 QQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVA 489
           Q      A+ M  S++L  +SV     AG  L  I   + ++     QIA AAE+QSAVA
Sbjct: 533 QNGTQQVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVA 592

Query: 490 EEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFKL 536
           EE++R++  + D + + + A+   A+ S +LA L  QL Q ++ F++
Sbjct: 593 EEISRSIVNVRDVSEQTATASDETAKSSVELARLGSQLQQMVSHFRV 639



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 50/275 (18%), Positives = 110/275 (40%), Gaps = 57/275 (20%)

Query: 126 TMIDLARNGQQGSLIYPWKNQQGNPADKLSFVNGFAPWGWILGSGMLLDDIEHAVYQQFL 185
           T+ ++ARN +Q SL     + Q    DK+                     +  A+  Q  
Sbjct: 409 TVQEVARNAEQASLAAADADGQARAGDKV---------------------VAEAI-AQIE 446

Query: 186 RMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLGKDELGIVAQ 245
           R+       T  M  L     +     + ++ DV+K VA+                    
Sbjct: 447 RLAAEVARSTDAMTHL-----QQESNKIGSVMDVIKAVAEQ------------------- 482

Query: 246 RINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTA 305
              N +A   +A +E+ ++  +    A+ +A      +Q      +++  L   +   T 
Sbjct: 483 --TNLLAL--NAAIEAARAGEAGRGFAV-VADEVRGLAQRTQKSTEEIEGLVAGLQNGTQ 537

Query: 306 TVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQ 365
            VA+V  ++      +++ +++A +  +++  +V +I++++ ++  A +Q + + E   +
Sbjct: 538 QVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAE---E 594

Query: 366 ISEVTSVISGISEQTNLLA---LNAAIEAARAGDQ 397
           IS     +  +SEQT   +     +++E AR G Q
Sbjct: 595 ISRSIVNVRDVSEQTATASDETAKSSVELARLGSQ 629