Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  277 bits (708), Expect = 8e-79
 Identities = 177/545 (32%), Positives = 294/545 (53%), Gaps = 10/545 (1%)

Query: 1   MLKLENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQVAY 60
           M  L N+ +S +L  I+IV ++  L+L  +    + ++L   +  + + V+Q+    + +
Sbjct: 1   MNSLRNMSISRRLWLILIVAVLMLLALGMLMLKQIHDDLYQAKRQQTQHVVQTASGILTF 60

Query: 61  LNQ-----TLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNP 115
            +       + +E AQ+QA + +  LR+D ++Y ++ D +   ++HP    L GQ + + 
Sbjct: 61  YHGLETTGVMTREAAQKQALSAVRGLRYDHDDYFWINDLTPVMIMHPANPKLDGQNL-SA 119

Query: 116 GKDTEGQFWFT-MIDLARNGQQGSLIYPWKNQQGN-PADKLSFVNGFAPWGWILGSGMLL 173
            +D +G   F   + LA+    G + Y W       P  K S++  F PWGWI+GSG+ +
Sbjct: 120 IRDPDGFAVFNEFVILAKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFEPWGWIIGSGVYV 179

Query: 174 DDIEHAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQG--DLTAQ 231
           DD++     Q  +  F  L + LVM  L  +I+R++++PL    + M  +A G  DLT  
Sbjct: 180 DDVQAEFSSQVWKASFIGLAIALVMALLVSLIARSIVRPLQAAVNAMGNIASGESDLTRS 239

Query: 232 IPVLGKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRD 291
           +   G+DE+  +++  N+  A +   + +    A+++ +++  + S+A +       Q  
Sbjct: 240 LDTHGQDEVTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQAHDRSQQQSQ 299

Query: 292 QLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGV 351
           Q+  +ATA+N++T  V DVA +AE  A +  DA  +A  G  ++ SS+  I  LS  +  
Sbjct: 300 QMELVATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSGTISQ 359

Query: 352 ATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNL 411
           A + +  L     QI  V  VI  I++QTNLLALNAAIEAARAG+QGRGFAVVADEVR L
Sbjct: 360 AVEVIRTLSAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLL 419

Query: 412 ASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHV 471
           A RT  ST EIQ MI RLQ  + +    +  S + +  ++  A  AG+ L+ I   ++++
Sbjct: 420 AQRTQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGESLRNL 479

Query: 472 SDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKL 531
           +     IA+A  +Q+ V E++N+NV+     +   + AA   +  S  L  LS QLD  L
Sbjct: 480 NGLNASIASATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVASAHLRGLSEQLDGLL 539

Query: 532 TAFKL 536
             FK+
Sbjct: 540 RQFKV 544