Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  231 bits (588), Expect = 7e-65
 Identities = 167/561 (29%), Positives = 289/561 (51%), Gaps = 30/561 (5%)

Query: 2   LKLENIKVSYKLAAIVIVGIVGFLSLLFI-------SANALKENLVAEREARLKAVIQST 54
           L L+   +S  +  +++  +V  L+ ++I            ++ L+ + +A L++ ++  
Sbjct: 3   LSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVA 62

Query: 55  LSQVAYL-NQTLPKEQA-QEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQM 112
           +S +  L +   P + A + Q   L++   +  + Y F  D     +      D VG+  
Sbjct: 63  MSTIKPLYDAAAPGDTAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGKSF 122

Query: 113 GNPGKDTEGQFWFTMIDLARNGQQGSLIYPWKNQQGNPAD---KLSFVNGFAPWGWILGS 169
            +  +D  G +     DL + G+ G+    + + Q    +   K+ +      W  ++G+
Sbjct: 123 KD-NRDPNGVY--VNRDLVKVGKDGTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGT 179

Query: 170 GMLLDDIE------HAVYQQFLR------MGFATLIVTLVMIGLGVVISRAVIQPLDTIK 217
            + LD IE       A  Q+ +       +G A +++ LV+  +G++++  +++PL  +K
Sbjct: 180 SVNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLL-LVIAAVGMLLANTILRPLHLMK 238

Query: 218 DVMKKVA--QGDLTAQIPVLGKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRI 275
             +  +A  +GDLT ++ +  +DELG +A   N  +  +H  + +  +  S +     ++
Sbjct: 239 ANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQV 298

Query: 276 ASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDV 335
           +  A+ + QA+  QR +  Q+ATA+NQM++   +VA  A+  +        E     + V
Sbjct: 299 SDQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVV 358

Query: 336 HSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAG 395
             S+  I AL  ++  +   ++ L++ V  I  V SVI  I+EQTNLLALNAAIEAARAG
Sbjct: 359 DGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAG 418

Query: 396 DQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAE 455
           + GRGFAVVADEVR LASRT  ST EIQ MI+RLQ    +   AM++S      + A A 
Sbjct: 419 EAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQAN 478

Query: 456 NAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAE 515
            AG+ L  +   I  ++    QIA+AAEEQ+AVAEE+NR+V  I  A   ++      A+
Sbjct: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538

Query: 516 ESEKLADLSRQLDQKLTAFKL 536
            S  LA+L ++L Q +  F++
Sbjct: 539 TSRSLAELGQRLGQLVGQFRI 559