Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (537), Expect = 6e-59
 Identities = 170/556 (30%), Positives = 273/556 (49%), Gaps = 33/556 (5%)

Query: 4   LENIKVSYKLAAIVIVGIVGFLSLLFISANALK------ENLVAEREARLKAVIQSTLSQ 57
           +    + + LA  V +  +  L + F S N +        +L A   A ++A+ ++T S+
Sbjct: 3   INKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEAT-SR 61

Query: 58  VAYLNQTLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDL---VGQQMGN 114
           +  +   +     QE A         D    +  ++E+R   +  +RQ +   V  Q+  
Sbjct: 62  IPRMRVGIDMMLLQETALK-------DAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNP 114

Query: 115 PGKDTEGQFWFTMIDLARNGQQGSLIYPWKNQQGNPADKLSFVNGFAP-WGWILG-SGML 172
             K+   +       + R   +  ++  + N     A  + + + +AP +G +   +  +
Sbjct: 115 ELKEQARKLQARFEQMVREELE-PMLQAFANNDMTTAQNI-YRDKYAPTYGEMRKQANQI 172

Query: 173 LDDI-------EHAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDT----IKDVMK 221
           LD +        HA  + F       +++    + +  + S  +I  L +    +KD M 
Sbjct: 173 LDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMS 232

Query: 222 KVAQG-DLTAQIPVLGKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAE 280
             A    L  ++ + G DEL  + +  N  I  VH ++ E  +++  +A  A  ++  A 
Sbjct: 233 SAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAH 292

Query: 281 ETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVD 340
            T     SQRD+  Q+ATA++++ ATV+++A +A   A     A+  +  G K V    +
Sbjct: 293 MTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQN 352

Query: 341 SIRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRG 400
            I+ L  EL  AT  V+ L   +  IS     I  ISEQTNLLALNAAIEAARAG+QGRG
Sbjct: 353 RIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRG 412

Query: 401 FAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSD 460
           FAVVADEVR LASR+  ST+EIQ +INRLQ  +     AM+K ++ +   V  +  A   
Sbjct: 413 FAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQS 472

Query: 461 LSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKL 520
           L+ I + I  ++D+  Q+ATA EEQS V E++NRNV  IN    E S  A  L+  S  L
Sbjct: 473 LTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASL 532

Query: 521 ADLSRQLDQKLTAFKL 536
             LS QLD+ + +F+L
Sbjct: 533 QRLSSQLDKLVGSFEL 548