Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  274 bits (701), Expect = 5e-78
 Identities = 174/513 (33%), Positives = 285/513 (55%), Gaps = 16/513 (3%)

Query: 21  IVGFLSLLFISANA---------LKENLVAEREARLKAVIQSTLSQVAYLNQTLPKEQAQ 71
           IV  ++LLF+   A         LK+    E +  L  V+ + LS  A     + +  A+
Sbjct: 15  IVALITLLFVLLTAVVLNRHYEALKQKSYDENQ-HLVEVVHTMLSSFA-ARTDVDEATAK 72

Query: 72  EQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKDTEGQ-FWFTMIDL 130
           +QA   + ALR+DG+NY ++ D++   V+HPI+  L GQ +    KD  G+ F+  M   
Sbjct: 73  QQALEAVKALRYDGSNYFWIQDQTPSMVMHPIKPALDGQDL-RTFKDGNGKAFFIEMAQK 131

Query: 131 ARNGQQGSLIYPWKNQ-QGNPADKLSFVNGFAPWGWILGSGMLLDDIEHAVYQQFLRMGF 189
            ++  +G + Y W    + +P DK+S+V  F PWGW +GSG+ L ++E         +  
Sbjct: 132 VKSKGEGFVDYVWPLPGEESPTDKISYVKEFKPWGWTVGSGIYLTNLEKEFAHLRNVIAV 191

Query: 190 ATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQG--DLTAQIPVLGKDELGIVAQRI 247
             L+  ++++ L  VI  ++++P+  + + MK ++QG  DLT  +P  G+DE+  +A+  
Sbjct: 192 FCLVSIVLVVVLVYVIGGSIVKPVQEVSERMKDISQGEGDLTRSLPETGQDEVTRLARYF 251

Query: 248 NNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATV 307
           N     +  +L+   ++ +S+ + A  + +S++ ++    +Q + + Q+A AM +MT  +
Sbjct: 252 NEYTEKMRHSLLGIRENINSLTQQAELVETSSKNSNAQAQTQNENMLQVAAAMEEMTTQI 311

Query: 308 ADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQIS 367
            +V+ +A+   + T  A      G   V S+V+ IR+L+ ++   +  V +L      I 
Sbjct: 312 NEVSNNADSAEKSTSSARGNVQNGASVVDSTVNDIRSLTSDIESVSSAVTELAAQTESIG 371

Query: 368 EVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMIN 427
            V  VI GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR LASRT  STDEIQ MI 
Sbjct: 372 AVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTGQSTDEIQAMIE 431

Query: 428 RLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSA 487
           +LQ  A S   A++ SQ+ +  +V  A  A  +L      +  ++D +++IA A E+Q+ 
Sbjct: 432 KLQSNAKSAVDAVKVSQSASTKTVDNAIQANQNLQEADRLMTEIADMSSEIARATEQQAE 491

Query: 488 VAEEMNRNVSGINDAALEMSQAATYLAEESEKL 520
            A E N  ++ ++ AA    + A  LA  S+ L
Sbjct: 492 AATEANMRINALSGAADSSLRTADELAAASQAL 524



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 238 DELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLA 297
           DE+  +A R   S   +  A++E +QS +  A  A++++ SA   S   V    Q +Q  
Sbjct: 410 DEVRTLASRTGQSTDEIQ-AMIEKLQSNAKSAVDAVKVSQSA---STKTVDNAIQANQNL 465

Query: 298 TAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVN 357
              +++   +AD++           +A+ EAN+    +  + DS    + EL  A+  + 
Sbjct: 466 QEADRLMTEIADMSSEIARATEQQAEAATEANMRINALSGAADSSLRTADELAAASQALR 525

Query: 358 KLKEGVMQIS 367
                +M I+
Sbjct: 526 ASCIAIMDIA 535