Pairwise Alignments

Query, 372 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  118 bits (295), Expect = 5e-31
 Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 4/192 (2%)

Query: 176 ELVKLNQSLEEKVIERTQQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQ 235
           +LV  N  LE++V ERT  L   N +L+  +  D+LTGL NR     +L     ++  + 
Sbjct: 383 KLVSANAELEQRVKERTAALETANAELDRQARFDALTGLLNRHGMEERLQQALAVSNPDT 442

Query: 236 QPFVCVMIDIDGFKAVNDHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPE 295
            P   VMIDID FK+VND  GH  GD VL  +A +++   R  D+  RLGG+EF+++ P 
Sbjct: 443 APLGIVMIDIDHFKSVNDRFGHATGDLVLKAVAGLMKSRLRKSDIAARLGGEEFVLMLPG 502

Query: 296 TNTAGGVYIAEQVCRAIQQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVY 355
            N A  +  A  + R + +  I    +I    ++S GV+            LR AD+A+Y
Sbjct: 503 ANAAEAMQTATDLVRLVGEAFIDPVGHI----TISCGVSQMLREDDSVASALRRADKALY 558

Query: 356 LAKNSGKNRVCA 367
            AK+ G+NR  A
Sbjct: 559 AAKSLGRNRAMA 570