Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., excinuclease ABC subunit UvrC from Rhodanobacter sp000427505 FW510-R12

 Score =  560 bits (1443), Expect = e-164
 Identities = 299/613 (48%), Positives = 402/613 (65%), Gaps = 19/613 (3%)

Query: 5   FDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIA 64
           FD   F++T+T  PGVYR ++A  E++YVGKA +LKKR+ SYF K     +  A+V+ IA
Sbjct: 9   FDGKAFVRTLTTSPGVYRHFDAAGELLYVGKAGNLKKRVGSYFLKPRMEPRIAAMVAQIA 68

Query: 65  KIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKK 123
           ++++TVT TE EAL+LE   IK   P+YN+LLRDDKSYPYI+LS    +PRL+ HRGAK 
Sbjct: 69  RVEITVTRTEGEALLLESQLIKSLKPRYNILLRDDKSYPYIYLSTGEDYPRLAFHRGAKN 128

Query: 124 RRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLI 183
             G YFGPYP   AVRE+L+L+QK+F VRQCED+ + NRTRPCL+YQIGRC+ PCV GLI
Sbjct: 129 LPGRYFGPYPSVYAVRESLNLMQKLFKVRQCEDSYFRNRTRPCLLYQIGRCSAPCV-GLI 187

Query: 184 SDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQ 243
           S + Y+  V +  +FL+G+ N V+  L E MEQAS+ L+FE AAK RDQ+ A+R++Q Q 
Sbjct: 188 SVEDYRNDVRHAEMFLEGRSNAVIDELAEAMEQASKALQFERAAKLRDQVAALRQLQAQH 247

Query: 244 FVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQ 303
            V   S  D+DVL    E G+AC+ +L  R G  LG+R  FP++P D    +V   F++Q
Sbjct: 248 HVQGAS-ADMDVLACRIEAGMACVSVLFFRDGISLGTRDFFPRLPLDAEPADVLAQFITQ 306

Query: 304 YYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTN 363
           YYL     R +P  +IL   L ++ E L   + + AG  V    +  G R ++L++A  N
Sbjct: 307 YYLD----RPVPRELILGEPLADQ-EILAELLGQQAGHAVDLKSSVRGERAQFLQMAERN 361

Query: 364 ALTAITTKMNHKMTISQRFKALQEELGMD-AITRMECFDISHTMGESTMASCVVFNQEGP 422
           A  ++T ++  + T+  RF  LQ+ LG+D +  R+ECFDISHTMGE T+ASCVVF  EGP
Sbjct: 362 AQASLTARLASRQTLGTRFDDLQKVLGLDESPRRIECFDISHTMGELTVASCVVFGPEGP 421

Query: 423 LKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKI-PDIIFIDGGKGQLNRAYEII 481
            K  YRR+NITGIT GDDYAAM Q L RR+ K  +     PD++ IDGG GQ+ +A  ++
Sbjct: 422 EKSHYRRFNITGITPGDDYAAMHQALTRRFRKLAEGEGARPDVLLIDGGSGQVAQALGVL 481

Query: 482 SSCWQDWPKYPKIIGIAKGVTRKPGLETLITI------DGDEFHLPSDAPALHLIQHIRD 535
                D     +++G+AKG  R+ G ETL+         G E H  S +PALHL+  +RD
Sbjct: 482 RELGVDG---IEVVGVAKGPGRRAGEETLVLARLESGSPGRELHPGSSSPALHLVAAVRD 538

Query: 536 ESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPG 595
           E+H  AI+GHR +R K R  S LE + G+G +RR ALLK  GGMQ L+RA VEE+ +V G
Sbjct: 539 EAHRFAISGHRKRREKAREHSVLEDVPGIGARRRSALLKAFGGMQGLERAGVEELMQVKG 598

Query: 596 ISHALAENIYQAL 608
           I   LAE IY +L
Sbjct: 599 IDRGLAERIYASL 611