Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 786 a.a., UvrABC system protein C from Xanthobacter sp. DMC5

 Score =  320 bits (819), Expect = 2e-91
 Identities = 174/450 (38%), Positives = 266/450 (59%), Gaps = 10/450 (2%)

Query: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70
           +K   N PGVYRM  A+  V+YVGKAK +KKR+ SY R    + +   +++  A+++   
Sbjct: 98  VKHAPNGPGVYRMIAADGTVLYVGKAKSIKKRVLSYTRPVGHTNRIARMIAGTAQMEFVS 157

Query: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSA-HKHPRLSSHRGAKKRRGEYF 129
           T TE EAL+LE N IKQ  P++NVLLRDDKS+PYI ++A H  P+++ HRGA+ R G+Y+
Sbjct: 158 TRTEPEALLLEANLIKQLKPRFNVLLRDDKSFPYILITADHVSPQIAKHRGARNRPGDYY 217

Query: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189
           GP+    AV  T++ +++ F +R C D+ Y NRTRPCL++QI RCAGPC  G +S Q Y 
Sbjct: 218 GPFASVWAVDRTINALERAFLLRSCSDSYYENRTRPCLLFQIKRCAGPCT-GEVSHQDYA 276

Query: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249
           E+V   R FL G+   +   L ++MEQA+ EL FE AA+ RD++ A+  VQ  Q ++   
Sbjct: 277 ELVREARAFLSGRSRAIKEELAKEMEQAAEELEFERAARLRDRLAALSAVQGSQGINPRG 336

Query: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309
           +E+ DV    Q+ G  C+ +   R G+  G+R+++P+     ++ EV  +FL+Q+Y    
Sbjct: 337 VEEADVFACHQQGGATCVEVFFFRTGQNWGNRAYYPRADRSLTEAEVLGAFLAQFY---- 392

Query: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369
           E +  P R++L     EE E L  A+SE AG +V   V   G +   +  A  NA  A+ 
Sbjct: 393 EDKPCP-RLLLLSHKVEEQELLADALSEKAGYRVEIAVPQRGEKRDLVDHALQNAREALA 451

Query: 370 TKMNHKMTISQRFKALQEELGMDA-ITRMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428
             +    T ++  + +    G+ A   R+E +D SH MG + +   +V   EG  K +YR
Sbjct: 452 RTLAESATQAKLLEGVAATFGLKAPPQRIEVYDNSHIMGTNAVGGMIVAGPEGFRKSQYR 511

Query: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQL 456
           ++NI    +  GDD+  M +VL RR+++ L
Sbjct: 512 KFNIKSADLVPGDDFGMMREVLTRRFARLL 541



 Score =  105 bits (261), Expect = 1e-26
 Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 5/149 (3%)

Query: 458 SSKIPDIIFIDGGKGQLNRAYEIISSCW-QDWPKYPKIIGIAKGVTRKPGLETLITIDGD 516
           +S  PD++ IDGG GQLN A +++      D P    ++GIAKG+ R+ G E        
Sbjct: 633 ASPWPDLVLIDGGLGQLNAARKVLEELGITDVP----LVGIAKGLDREAGREQFFLPGRT 688

Query: 517 EFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYL 576
            F +    P L+ IQ +RDE+H  AI  HRA+R K    + L+ I GVGP R++ALL++ 
Sbjct: 689 PFRMEPRDPVLYYIQRLRDEAHRFAIGSHRARRKKDITEAGLQAIPGVGPTRKRALLRHF 748

Query: 577 GGMQELKRASVEEIAKVPGISHALAENIY 605
           G ++ ++RAS+ ++ +V GI+   A+ +Y
Sbjct: 749 GTLKAIERASLADLEQVAGINAGTAKAVY 777