Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., excinuclease ABC subunit C from Pseudomonas simiae WCS417

 Score =  618 bits (1594), Expect = 0.0
 Identities = 329/613 (53%), Positives = 429/613 (69%), Gaps = 14/613 (2%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           MST FD + FL T + +PGVYRM+++EA ++YVGKAK+LK RL SYFRK+  + KT ALV
Sbjct: 1   MSTPFDPSAFLSTCSGRPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           + IA+++ T+T  ETEAL+LE   IK++ P YN+LLRDDKSYPY+FLS    PRLS HRG
Sbjct: 61  ARIAQVETTITANETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGNFPRLSIHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
           AKK++G+YFGPYP +GA+RE+L L+QK F VRQCED+ Y NRTRPCL YQI RC  PCV 
Sbjct: 121 AKKQKGKYFGPYPSAGAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCV- 179

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           GL+    Y E V +  +FL+G+ N +   L   MEQA+  L FE AA+ RDQI  +RRVQ
Sbjct: 180 GLVEPAEYAEDVRHSVMFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQ 239

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           +QQ + +    D+DV+      G AC+H++ +R G+VLGS++ FP+   D    EV  +F
Sbjct: 240 DQQSM-EGGTGDVDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEDVAEVMAAF 298

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           L QYY+S  E R +P+ +I+N  + E+   L  AI EL GR++       GTR R+ +LA
Sbjct: 299 LGQYYVSSPE-RDLPSELIVN-VVHEDFPTLIEAIHELRGRELDISHRVRGTRARWQQLA 356

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMD-AITRMECFDISHTMGESTMASCVVFNQ 419
            TNA  A++ ++ ++  ++ RF AL E L +D    R+EC+DISH+ GE+T+ASCVVF  
Sbjct: 357 VTNAEQALSARLANRQHVAARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGP 416

Query: 420 EGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLD-SSKIPDIIFIDGGKGQLNRAY 478
           EGP+K +YRRYNI G+T GDDYAAM Q L RR+SK  D   K+PDI+ +DGGKGQL+ A 
Sbjct: 417 EGPIKSDYRRYNIEGVTAGDDYAAMHQALTRRFSKLKDGEGKLPDILLVDGGKGQLSMAR 476

Query: 479 EIISSCWQDWPKYPKII--GIAKGVTRKPGLETLITID-GDEFHLPSDAPALHLIQHIRD 535
           ++++         P +I  G+AKG TRK G ETL   D   EF L  D+PALHLIQ IRD
Sbjct: 477 DVLNEL-----AVPDLILLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRD 531

Query: 536 ESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPG 595
           E+H  AI GHRA+RGKTRRTSTLEG+ GVGP RR+ LLK+ GG+QEL RAS++EIAK PG
Sbjct: 532 EAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPG 591

Query: 596 ISHALAENIYQAL 608
           IS  LAE IY  L
Sbjct: 592 ISKKLAELIYANL 604