Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., Excinuclease ABC subunit C from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  438 bits (1127), Expect = e-127
 Identities = 262/670 (39%), Positives = 378/670 (56%), Gaps = 90/670 (13%)

Query: 18  PGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEA 77
           PGVYR ++A+ +++YVGKA++LKKR++SYF+KN D  +   +VS I +++ TV  +E EA
Sbjct: 20  PGVYRYFDAQGQLLYVGKARNLKKRVSSYFQKNHDGTRIGHMVSKIVRMETTVVRSEAEA 79

Query: 78  LILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKH---------------PRLSSHRGAK 122
           L+LE+N IK   PK+N+L RDDKSYPY+ ++  +                PR++ +RG  
Sbjct: 80  LLLENNLIKTLNPKFNILFRDDKSYPYLKITGTREVFKPSARLPSPSLAFPRMAYYRGVV 139

Query: 123 KRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGL 182
            RR  Y+GPYP + AV+E++ L+QK+F +R CEDTV++NRTRPCL+YQI RC+GPCV  L
Sbjct: 140 DRRHSYYGPYPSAWAVKESITLLQKVFRLRTCEDTVFTNRTRPCLLYQIKRCSGPCV-DL 198

Query: 183 ISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQ 242
           I  + Y + V     FL+G+   VL  L ++M   + +L FE AA+ R+Q+ A+ RV  Q
Sbjct: 199 IDHEAYAQDVRDAERFLRGETQAVLDTLEQRMLAHAEKLEFEQAAEIRNQMSALSRVLHQ 258

Query: 243 QFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFP----------------- 285
           Q +   S +D+DVL      G AC+++ MIR G+ LG R +FP                 
Sbjct: 259 QAMDTVSDKDVDVLAVKVHGGRACVNLAMIRGGRHLGDRPYFPAHVDDATAIDNALAEEG 318

Query: 286 ------KIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELA 339
                   P++   V+V E+F++Q+YL  +   ++     + + L +       A++E  
Sbjct: 319 GEAPRSADPAERVAVQVLEAFIAQHYLGVAMPHTLVTSHPVGKPLLD-------ALTEQI 371

Query: 340 GRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQRFKALQEELGMD----AIT 395
           G KV    +P   R  +L++A  NA  A+   +  + +   R +AL + L +        
Sbjct: 372 GAKVNAVHHPREHRRIWLEMAQKNADIALARLLAEEGSQQARTRALADALNLPDDQLDTL 431

Query: 396 RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSK- 454
           R+ECFDISHT GEST ASCVVF        +YRRY I GIT GDDYAAM QVL RRY + 
Sbjct: 432 RIECFDISHTAGESTQASCVVFEGHKMQNSQYRRYKIDGITPGDDYAAMRQVLLRRYGRI 491

Query: 455 ----------------------------------QLDSSKIPDIIFIDGGKGQLNRAYEI 480
                                              +   ++PD++ +DGGKGQ++ A E+
Sbjct: 492 AEALRAEEDAPLALPEAVAVDAPEEPAAAEPTVESVAGPRMPDLVLVDGGKGQVSMAREV 551

Query: 481 ISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDG-DEFHLPSDAPALHLIQHIRDESHN 539
                 D      I+G+ KG  RK GLE L+  DG ++ +L  D+ AL L+  IRDE+H 
Sbjct: 552 FEQLGLD---LSLIVGVEKGEGRKVGLEELVFADGREKVYLGHDSAALMLVAQIRDEAHR 608

Query: 540 HAIAGHRAQRGKTRR-TSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
            AI G RAQR K R   S LE I GVGPK+R  LL+  GG++ +  ASVE++  V GIS 
Sbjct: 609 FAITGMRAQRAKVRTGGSKLEDIPGVGPKKRARLLQRFGGVRGVASASVEDLCTVEGISA 668

Query: 599 ALAENIYQAL 608
            LA+ IY+AL
Sbjct: 669 ELADAIYRAL 678