Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., UvrABC system protein C from Magnetospirillum magneticum AMB-1

 Score =  412 bits (1060), Expect = e-119
 Identities = 229/608 (37%), Positives = 352/608 (57%), Gaps = 19/608 (3%)

Query: 8   APFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKID 67
           A  + T+   PGVYRM + + +V+YVGKAK LKKR+ +Y R +    + + +++  A ++
Sbjct: 19  AQVVATLPLSPGVYRMLSGKGDVLYVGKAKSLKKRVVAYTRPDRMPLRIQRMIAETASME 78

Query: 68  VTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSA-HKHPRLSSHRGAKKRRG 126
           V  T TE EAL+LE N IK   P+YN+LL+DDK++P+I ++A H  P++  HRGA+ R+G
Sbjct: 79  VVTTRTEVEALLLESNLIKSLGPRYNILLKDDKTFPHILITADHDWPQVLKHRGARNRKG 138

Query: 127 EYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQ 186
           EYFGP+  +GAV +TL  +Q+ F +R C D+V+++RTRPCL++QI RC+ PCV+ +  D+
Sbjct: 139 EYFGPFASAGAVNQTLAALQRAFLLRSCSDSVFASRTRPCLLFQIKRCSAPCVERIDRDE 198

Query: 187 GYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVS 246
            Y  +V   R FL G+  +V   L  +ME A+  + +E AA  RD+I+A+ R+Q  Q ++
Sbjct: 199 -YLALVEEARAFLSGQSRRVQHDLTARMESAAEAMEYEAAAVFRDRIRALTRIQAHQDIN 257

Query: 247 DDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYL 306
              +E+ DV+   Q     CI +   R G   G+R++FP         ++  +FL Q+Y 
Sbjct: 258 PAEVEEADVVALHQAGDGVCIQVFFFRSGCNYGNRAYFPVHAQGEEAPQIMAAFLGQFY- 316

Query: 307 SHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALT 366
               A   P R IL     +E   +  A+SE AGRKVT  V   G R R ++ A+ NA  
Sbjct: 317 ----ADKTPPREILLSLEPDEVAIVAQALSEKAGRKVTLSVPKRGDRKRLVEHAHDNARD 372

Query: 367 AITTKMNHKMTISQRFKALQEELGMD-AITRMECFDISHTMGESTMASCVVFNQEGPLKQ 425
           A+  +M       +  + + E  GM+ A  R+E +D SH  G   + + +V   +G +K 
Sbjct: 373 ALGRRMAESGAQRKLLEGVAELFGMESAPERIEVYDNSHIQGSDAVGAMIVAGPDGLMKS 432

Query: 426 EYRRYNI--TGITGGDDYAAMAQVLERRYSK------QLDSSKIPDIIFIDGGKGQLNRA 477
            YR++NI  T +T GDD+  M +VL RR+++        D    PD+  IDGG+GQLN A
Sbjct: 433 AYRKFNIRSTDLTPGDDFGMMREVLTRRFARAQKEDPDRDRGLWPDLALIDGGRGQLNAA 492

Query: 478 YEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDES 537
             +++    D      ++GIAKG  R  G E       +   L S  P L+ +Q +RDE+
Sbjct: 493 LGVLAELGID---DVMLVGIAKGPDRNAGRERFFLAGKEPISLESRHPVLYFLQRLRDEA 549

Query: 538 HNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGIS 597
           H  AI  HRA+R K    STL+ + G+GPKR++ALL + G  + +  A + ++  V GIS
Sbjct: 550 HRFAIGTHRARRSKGLVQSTLDALPGIGPKRKKALLHHFGSARAVAEAGLPDLESVEGIS 609

Query: 598 HALAENIY 605
           HA+A+ I+
Sbjct: 610 HAMAKKIH 617