Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Excinuclease ABC subunit C from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  777 bits (2006), Expect = 0.0
 Identities = 390/611 (63%), Positives = 480/611 (78%), Gaps = 4/611 (0%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           +S  FD+  FLKTVT+QPGVYRMY+A   VIYVGKAKDLKKRL+SYFR NL S KT+ALV
Sbjct: 1   VSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           + I  IDVTVTHTETEAL+LEHNYIK Y P+YNVLLRDDKSYP+IFLS   HPRL+ HRG
Sbjct: 61  AQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
           AK  +GEYFGP+P+  AVRETL L+QKIFP+RQCE++VY NR+RPCL YQIGRC GPCV 
Sbjct: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVA 180

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           GL+S++ Y + V Y+RLFL GKD+QVL+ L+ +ME+AS++L FE+AA+ RDQIQA+RRV 
Sbjct: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVT 240

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           E+QFVS+   +DLDV+G A + G+AC+H+L IRQGKVLGSRS+FPK+P  T   EV E+F
Sbjct: 241 EKQFVSNAG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETF 299

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           + Q+YL  S+ R++P  I+L+  L+++T  L  ++SELAGR++     P G R RYLKLA
Sbjct: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKT-LLADSLSELAGRRIHVQTKPRGDRARYLKLA 358

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMDAITRMECFDISHTMGESTMASCVVFNQE 420
            TNA TA+ TK++ + TI+QR  AL   L + AI RMECFDISHTMGE T+ASCVVF+  
Sbjct: 359 RTNAATALITKLSQQSTITQRLSALAAVLKLPAIKRMECFDISHTMGEQTVASCVVFDAN 418

Query: 421 GPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEI 480
           GPL+ EYRRYNI GIT GDDYAAM QVL RRY K ++ SKIPD+I IDGGKGQL +A  +
Sbjct: 419 GPLRAEYRRYNIAGITPGDDYAAMNQVLRRRYGKAIEESKIPDVILIDGGKGQLAQAKAV 478

Query: 481 ISSCWQDWPKY-PKIIGIAKGVTRKPGLETL-ITIDGDEFHLPSDAPALHLIQHIRDESH 538
            +     W K+ P ++G+AKG  RK GLETL    +G+ F LP D+PALH+IQHIRDESH
Sbjct: 479 FAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538

Query: 539 NHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
           +HAI GHR +R K + TSTLE IEGVGPKRRQ LLKY+GG+Q L+ ASVEEIAKVPGIS 
Sbjct: 539 DHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598

Query: 599 ALAENIYQALK 609
            LAE I+ +LK
Sbjct: 599 GLAEKIFWSLK 609