Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) from Escherichia coli BW25113

 Score =  785 bits (2027), Expect = 0.0
 Identities = 391/611 (63%), Positives = 481/611 (78%), Gaps = 4/611 (0%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           MS QFD+  FLKTVT+QPGVYRMY+A   VIYVGKAKDLKKRL+SYFR NL S KT+ALV
Sbjct: 1   MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           + I +IDVTVTHTETEAL+LEHNYIK Y P+YNVLLRDDKSYP+IFLS   HPRL+ HRG
Sbjct: 61  AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
           AK  +GEYFGP+P+  AVRETL L+QKIFP+RQCE++VY NR+RPCL YQIGRC GPCV+
Sbjct: 121 AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVE 180

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           GL+S++ Y + V Y+RLFL GKD+QVL+ L+ +ME AS+ L FE+AA+ RDQIQA+RRV 
Sbjct: 181 GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT 240

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           E+QFVS+   +DLDV+G A + G+AC+H+L IRQGKVLGSRS+FPK+P  T   EV E+F
Sbjct: 241 EKQFVSNTG-DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETF 299

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           + Q+YL  S+ R++P  I+L+  L+++T  L  ++SELAGRK+     P G R RYLKLA
Sbjct: 300 VGQFYLQGSQMRTLPGEILLDFNLSDKT-LLADSLSELAGRKINVQTKPRGDRARYLKLA 358

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMDAITRMECFDISHTMGESTMASCVVFNQE 420
            TNA TA+T+K++ + T+ QR  AL   L +  + RMECFDISHTMGE T+ASCVVF+  
Sbjct: 359 RTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDAN 418

Query: 421 GPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEI 480
           GPL+ EYRRYNITGIT GDDYAAM QVL RRY K +D SKIPD+I IDGGKGQL +A  +
Sbjct: 419 GPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNV 478

Query: 481 ISSCWQDWPK-YPKIIGIAKGVTRKPGLETL-ITIDGDEFHLPSDAPALHLIQHIRDESH 538
            +     W K +P ++G+AKG  RK GLETL    +G+ F LP D+PALH+IQHIRDESH
Sbjct: 479 FAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESH 538

Query: 539 NHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
           +HAI GHR +R K + TS+LE IEGVGPKRRQ LLKY+GG+Q L+ ASVEEIAKVPGIS 
Sbjct: 539 DHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ 598

Query: 599 ALAENIYQALK 609
            LAE I+ +LK
Sbjct: 599 GLAEKIFWSLK 609