Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., excinuclease ABC subunit UvrC from Erwinia tracheiphila SCR3

 Score =  765 bits (1976), Expect = 0.0
 Identities = 385/611 (63%), Positives = 478/611 (78%), Gaps = 4/611 (0%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           M+  FD+  FL++VT+QPGVYRMY+AE  VIYVGKAKDLKKRL+SYFR    S KT+ALV
Sbjct: 1   MNDVFDAKSFLQSVTSQPGVYRMYDAEGTVIYVGKAKDLKKRLSSYFRGTQGSRKTEALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
            +I +IDVTVTHTETEAL+LEHNYIK Y P+YNVLLRDDKSYP IFLSA KHPRL+SHRG
Sbjct: 61  GSIYQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPSIFLSADKHPRLASHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
           AK  +G+YFGP+P+  AVRETL L+QKIFPVRQCE++VY NR+RPCL YQIGRC GPCVK
Sbjct: 121 AKHAKGDYFGPFPNGYAVRETLSLLQKIFPVRQCENSVYHNRSRPCLQYQIGRCLGPCVK 180

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           GL+S++ Y +   Y+RLFL GKD+QVL  LV +ME AS+ L+FE+AA+ RDQIQA+RRV 
Sbjct: 181 GLVSEEEYAQQTEYVRLFLSGKDDQVLKQLVRRMEAASQALKFEEAARLRDQIQAVRRVT 240

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           E+QFVS++  +DLDV+G A + G+AC+H+L IRQGKVLGSRS+FPK+P  T   EV ++F
Sbjct: 241 ERQFVSNNG-DDLDVIGVAFDAGMACMHVLFIRQGKVLGSRSYFPKVPGGTELSEVVQTF 299

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           L Q+YL  S+ R++P  I+L+  L E+ E L  +++E+ GR+V+   NP G R RYLKLA
Sbjct: 300 LGQFYLQGSQTRTLPGDILLDFFLPEK-ELLAASLTEMVGRRVSIQSNPRGDRARYLKLA 358

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMDAITRMECFDISHTMGESTMASCVVFNQE 420
            TNA TA+ ++++ + TI QR +AL E L +  I RMECFDISHTMGE T+ASCVVF+  
Sbjct: 359 CTNASTALLSRLSQQSTIHQRLQALAELLDLPTINRMECFDISHTMGEQTVASCVVFDNN 418

Query: 421 GPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEI 480
           GPL+ EYRRYNITGIT GDDYAAM QVL RRY K L  SKIPD+I IDGGKGQL +A  +
Sbjct: 419 GPLRSEYRRYNITGITPGDDYAAMNQVLCRRYGKDLIDSKIPDVILIDGGKGQLGQAKNV 478

Query: 481 ISSCWQDWPK-YPKIIGIAKGVTRKPGLETL-ITIDGDEFHLPSDAPALHLIQHIRDESH 538
            +    +W K  P ++G+AKG  RK GLETL    +G+ F LP D+PALH+IQHIRD+SH
Sbjct: 479 FADLNVNWDKERPILLGVAKGTARKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDDSH 538

Query: 539 NHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
           N+AI GHR +R K + TS LE IEG+GPKRRQ LLKY+GG+Q L  A+V+EI KVPGIS 
Sbjct: 539 NYAITGHRNKRAKVKNTSALESIEGIGPKRRQMLLKYMGGLQPLMNATVDEIEKVPGISK 598

Query: 599 ALAENIYQALK 609
            LAE I+ +LK
Sbjct: 599 LLAEKIFYSLK 609